Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF235 and GFF236 are separated by 100 nucleotides GFF236 and GFF237 are separated by 72 nucleotides GFF237 and GFF238 are separated by 136 nucleotides GFF238 and GFF239 are separated by 1 nucleotides GFF239 and GFF240 overlap by 4 nucleotides
GFF235 - hypothetical protein, at 264,550 to 264,906
GFF235
GFF236 - Two-component transcriptional response regulator receiver domain, at 265,007 to 265,396
GFF236
GFF237 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 265,469 to 266,686
GFF237
GFF238 - hypothetical protein, at 266,823 to 267,221
GFF238
GFF239 - DNA polymerase III chi subunit (EC 2.7.7.7), at 267,223 to 267,663
GFF239
GFF240 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 267,660 to 269,159
GFF240
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 264.507 kb on + strand at 264.507 kb on + strand at 264.507 kb on + strand at 264.507 kb on + strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.508 kb on - strand at 264.523 kb on + strand at 264.939 kb on - strand at 264.950 kb on + strand at 264.950 kb on + strand at 264.951 kb on - strand at 264.975 kb on + strand at 264.975 kb on + strand at 264.975 kb on + strand at 264.975 kb on + strand at 264.976 kb on - strand at 264.976 kb on - strand at 264.976 kb on - strand at 264.976 kb on - strand at 264.976 kb on - strand at 264.980 kb on + strand at 264.980 kb on + strand at 264.980 kb on + strand at 264.981 kb on - strand at 264.981 kb on - strand at 265.265 kb on + strand, within GFF236 at 265.265 kb on + strand, within GFF236 at 265.265 kb on + strand, within GFF236 at 265.265 kb on + strand, within GFF236 at 265.265 kb on + strand, within GFF236 at 265.265 kb on + strand, within GFF236 at 265.265 kb on + strand, within GFF236 at 265.265 kb on + strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.266 kb on - strand, within GFF236 at 265.318 kb on - strand, within GFF236 at 265.355 kb on + strand, within GFF236 at 265.355 kb on + strand, within GFF236 at 265.355 kb on + strand, within GFF236 at 265.355 kb on + strand, within GFF236 at 265.355 kb on + strand, within GFF236 at 265.355 kb on + strand, within GFF236 at 265.356 kb on - strand, within GFF236 at 265.356 kb on - strand, within GFF236 at 265.356 kb on - strand, within GFF236 at 265.356 kb on - strand, within GFF236 at 265.356 kb on - strand, within GFF236 at 265.356 kb on - strand, within GFF236 at 265.394 kb on + strand at 265.394 kb on + strand at 265.394 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.509 kb on + strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.510 kb on - strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.515 kb on + strand at 265.516 kb on - strand at 265.516 kb on - strand at 265.516 kb on - strand at 265.516 kb on - strand at 265.516 kb on - strand at 265.516 kb on - strand at 265.516 kb on - strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.584 kb on + strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.585 kb on - strand at 265.611 kb on + strand, within GFF237 at 265.675 kb on - strand, within GFF237 at 265.675 kb on - strand, within GFF237 at 265.675 kb on - strand, within GFF237 at 265.675 kb on - strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.680 kb on + strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.681 kb on - strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.689 kb on + strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 265.690 kb on - strand, within GFF237 at 266.080 kb on - strand, within GFF237 at 266.080 kb on - strand, within GFF237 at 266.086 kb on + strand, within GFF237 at 266.086 kb on + strand, within GFF237 at 266.086 kb on + strand, within GFF237 at 266.087 kb on - strand, within GFF237 at 266.136 kb on + strand, within GFF237 at 266.136 kb on + strand, within GFF237 at 266.136 kb on + strand, within GFF237 at 266.136 kb on + strand, within GFF237 at 266.136 kb on + strand, within GFF237 at 266.137 kb on - strand, within GFF237 at 266.137 kb on - strand, within GFF237 at 266.137 kb on - strand, within GFF237 at 266.137 kb on - strand, within GFF237 at 266.137 kb on - strand, within GFF237 at 266.137 kb on - strand, within GFF237 at 266.149 kb on + strand, within GFF237 at 266.211 kb on + strand, within GFF237 at 266.211 kb on + strand, within GFF237 at 266.211 kb on + strand, within GFF237 at 266.212 kb on - strand, within GFF237 at 266.212 kb on - strand, within GFF237 at 266.212 kb on - strand, within GFF237 at 266.212 kb on - strand, within GFF237 at 266.262 kb on + strand, within GFF237 at 266.262 kb on + strand, within GFF237 at 266.262 kb on + strand, within GFF237 at 266.262 kb on + strand, within GFF237 at 266.262 kb on + strand, within GFF237 at 266.262 kb on + strand, within GFF237 at 266.262 kb on + strand, within GFF237 at 266.263 kb on - strand, within GFF237 at 266.421 kb on + strand, within GFF237 at 266.506 kb on + strand, within GFF237 at 266.506 kb on + strand, within GFF237 at 266.506 kb on + strand, within GFF237 at 266.506 kb on + strand, within GFF237 at 266.506 kb on + strand, within GFF237 at 266.712 kb on - strand at 266.716 kb on + strand at 266.745 kb on + strand at 266.745 kb on + strand at 266.746 kb on - strand at 266.813 kb on - strand at 266.824 kb on + strand at 266.824 kb on + strand at 266.825 kb on - strand at 266.843 kb on + strand at 266.844 kb on - strand at 266.844 kb on - strand at 266.844 kb on - strand at 266.844 kb on - strand at 266.844 kb on - strand at 267.275 kb on + strand, within GFF239 at 267.617 kb on + strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.618 kb on - strand, within GFF239 at 267.641 kb on + strand at 267.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 264,507 + -0.5 264,507 + -1.2 264,507 + -1.9 264,507 + +0.6 264,508 - -2.4 264,508 - -1.1 264,508 - +0.2 264,508 - -0.1 264,508 - -0.0 264,508 - +0.1 264,508 - -0.9 264,508 - -0.6 264,508 - +1.3 264,508 - -0.4 264,523 + -1.3 264,939 - -0.5 264,950 + -1.3 264,950 + -0.5 264,951 - +1.1 264,975 + -0.2 264,975 + +0.7 264,975 + +0.2 264,975 + -0.2 264,976 - -0.1 264,976 - +0.3 264,976 - +0.3 264,976 - -0.2 264,976 - -1.0 264,980 + -0.3 264,980 + -0.7 264,980 + -1.0 264,981 - +0.0 264,981 - -2.4 265,265 + GFF236 0.66 +0.1 265,265 + GFF236 0.66 -0.4 265,265 + GFF236 0.66 +0.0 265,265 + GFF236 0.66 +1.3 265,265 + GFF236 0.66 -0.5 265,265 + GFF236 0.66 +0.9 265,265 + GFF236 0.66 +1.3 265,265 + GFF236 0.66 -0.3 265,266 - GFF236 0.66 -0.2 265,266 - GFF236 0.66 -1.0 265,266 - GFF236 0.66 -0.0 265,266 - GFF236 0.66 -1.8 265,266 - GFF236 0.66 +0.9 265,266 - GFF236 0.66 +0.1 265,266 - GFF236 0.66 +2.9 265,266 - GFF236 0.66 -0.7 265,266 - GFF236 0.66 +0.1 265,266 - GFF236 0.66 -0.1 265,266 - GFF236 0.66 -1.0 265,318 - GFF236 0.80 -0.9 265,355 + GFF236 0.89 -0.9 265,355 + GFF236 0.89 -0.4 265,355 + GFF236 0.89 +0.0 265,355 + GFF236 0.89 -1.7 265,355 + GFF236 0.89 -0.7 265,355 + GFF236 0.89 -1.3 265,356 - GFF236 0.89 +0.7 265,356 - GFF236 0.89 -0.7 265,356 - GFF236 0.89 -2.1 265,356 - GFF236 0.89 -0.4 265,356 - GFF236 0.89 -1.3 265,356 - GFF236 0.89 -0.5 265,394 + +0.4 265,394 + +0.3 265,394 + -0.5 265,509 + -1.3 265,509 + -1.8 265,509 + -0.0 265,509 + -0.1 265,509 + -0.7 265,509 + -0.5 265,509 + -1.0 265,509 + -1.3 265,509 + -0.8 265,509 + -0.1 265,509 + +0.3 265,509 + +0.7 265,509 + -1.4 265,509 + -0.3 265,509 + +0.3 265,509 + -0.0 265,509 + -1.3 265,509 + +0.9 265,510 - +0.3 265,510 - +0.0 265,510 - -0.7 265,510 - -0.1 265,510 - -0.3 265,510 - +0.7 265,510 - -1.0 265,510 - -1.2 265,510 - -1.6 265,510 - -0.7 265,515 + +0.0 265,515 + -2.0 265,515 + -1.3 265,515 + -1.0 265,515 + -1.3 265,515 + +1.0 265,515 + -1.4 265,515 + +0.5 265,515 + +0.3 265,516 - -0.1 265,516 - -1.3 265,516 - -1.0 265,516 - +0.5 265,516 - +0.7 265,516 - -0.6 265,516 - -0.9 265,584 + +0.4 265,584 + +0.3 265,584 + -2.2 265,584 + -0.3 265,584 + +0.3 265,584 + -0.7 265,584 + -0.0 265,584 + +0.7 265,584 + -1.0 265,584 + -0.8 265,584 + -0.9 265,584 + -0.6 265,584 + -0.1 265,584 + -0.7 265,584 + -1.0 265,584 + -0.2 265,585 - -0.4 265,585 - -0.7 265,585 - -0.2 265,585 - -0.0 265,585 - +0.9 265,585 - +0.3 265,585 - -1.0 265,585 - +0.5 265,585 - -0.1 265,585 - +0.5 265,585 - +0.8 265,585 - -0.6 265,585 - -1.7 265,611 + GFF237 0.12 +0.5 265,675 - GFF237 0.17 -0.9 265,675 - GFF237 0.17 +0.1 265,675 - GFF237 0.17 -0.1 265,675 - GFF237 0.17 -0.7 265,680 + GFF237 0.17 -0.4 265,680 + GFF237 0.17 +0.5 265,680 + GFF237 0.17 -0.3 265,680 + GFF237 0.17 -1.3 265,680 + GFF237 0.17 -0.1 265,680 + GFF237 0.17 -0.1 265,680 + GFF237 0.17 -0.6 265,680 + GFF237 0.17 -1.0 265,681 - GFF237 0.17 -0.3 265,681 - GFF237 0.17 -0.8 265,681 - GFF237 0.17 +0.0 265,681 - GFF237 0.17 -0.3 265,681 - GFF237 0.17 -0.3 265,681 - GFF237 0.17 -0.2 265,681 - GFF237 0.17 -1.1 265,681 - GFF237 0.17 +0.9 265,681 - GFF237 0.17 +0.5 265,689 + GFF237 0.18 +0.1 265,689 + GFF237 0.18 -0.5 265,689 + GFF237 0.18 -0.1 265,689 + GFF237 0.18 -1.0 265,689 + GFF237 0.18 -1.3 265,689 + GFF237 0.18 -0.7 265,689 + GFF237 0.18 +0.3 265,689 + GFF237 0.18 +0.5 265,689 + GFF237 0.18 -0.0 265,689 + GFF237 0.18 -1.3 265,690 - GFF237 0.18 -0.9 265,690 - GFF237 0.18 -0.6 265,690 - GFF237 0.18 -1.5 265,690 - GFF237 0.18 -1.1 265,690 - GFF237 0.18 -0.1 265,690 - GFF237 0.18 -0.2 265,690 - GFF237 0.18 -0.3 265,690 - GFF237 0.18 -1.1 265,690 - GFF237 0.18 -1.0 265,690 - GFF237 0.18 -0.6 265,690 - GFF237 0.18 -1.0 266,080 - GFF237 0.50 +0.8 266,080 - GFF237 0.50 -1.3 266,086 + GFF237 0.51 -1.9 266,086 + GFF237 0.51 -0.3 266,086 + GFF237 0.51 -1.3 266,087 - GFF237 0.51 +1.1 266,136 + GFF237 0.55 -0.3 266,136 + GFF237 0.55 -0.2 266,136 + GFF237 0.55 +0.0 266,136 + GFF237 0.55 -0.4 266,136 + GFF237 0.55 -0.5 266,137 - GFF237 0.55 -1.0 266,137 - GFF237 0.55 -0.6 266,137 - GFF237 0.55 -0.8 266,137 - GFF237 0.55 +0.0 266,137 - GFF237 0.55 -0.7 266,137 - GFF237 0.55 -0.3 266,149 + GFF237 0.56 -1.2 266,211 + GFF237 0.61 -1.2 266,211 + GFF237 0.61 -0.9 266,211 + GFF237 0.61 -0.3 266,212 - GFF237 0.61 -0.5 266,212 - GFF237 0.61 +0.5 266,212 - GFF237 0.61 -0.2 266,212 - GFF237 0.61 +1.3 266,262 + GFF237 0.65 -1.5 266,262 + GFF237 0.65 -1.3 266,262 + GFF237 0.65 -1.2 266,262 + GFF237 0.65 -0.8 266,262 + GFF237 0.65 -0.0 266,262 + GFF237 0.65 -1.0 266,262 + GFF237 0.65 -1.3 266,263 - GFF237 0.65 -0.5 266,421 + GFF237 0.78 +0.2 266,506 + GFF237 0.85 +1.0 266,506 + GFF237 0.85 -1.0 266,506 + GFF237 0.85 +0.3 266,506 + GFF237 0.85 -0.5 266,506 + GFF237 0.85 +0.9 266,712 - +0.9 266,716 + -0.5 266,745 + -0.9 266,745 + -0.5 266,746 - -0.4 266,813 - -0.3 266,824 + -0.5 266,824 + +2.3 266,825 - +0.3 266,843 + -0.1 266,844 - +1.0 266,844 - +0.5 266,844 - +1.3 266,844 - -0.5 266,844 - -0.3 267,275 + GFF239 0.12 -2.9 267,617 + GFF239 0.89 -1.3 267,618 - GFF239 0.90 -1.9 267,618 - GFF239 0.90 -2.2 267,618 - GFF239 0.90 -1.9 267,618 - GFF239 0.90 -2.0 267,641 + -1.7 267,642 - -1.5
Or see this region's nucleotide sequence