Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2340 and GFF2341 are separated by 120 nucleotides GFF2341 and GFF2342 overlap by 4 nucleotides GFF2342 and GFF2343 are separated by 5 nucleotides GFF2343 and GFF2344 overlap by 4 nucleotides
GFF2340 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 391,246 to 392,739
GFF2340
GFF2341 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 392,860 to 393,690
GFF2341
GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676
GFF2342
GFF2343 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 394,682 to 395,557
GFF2343
GFF2344 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 395,554 to 396,504
GFF2344
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1 at 392.810 kb on - strand at 392.825 kb on + strand at 392.924 kb on + strand at 393.369 kb on - strand, within GFF2341 at 393.632 kb on + strand at 393.632 kb on + strand at 393.802 kb on + strand, within GFF2342 at 393.802 kb on + strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.934 kb on + strand, within GFF2342 at 393.935 kb on - strand, within GFF2342 at 393.997 kb on + strand, within GFF2342 at 393.998 kb on - strand, within GFF2342 at 394.609 kb on - strand at 394.683 kb on + strand at 394.683 kb on + strand at 394.684 kb on - strand at 394.684 kb on - strand at 395.250 kb on - strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 392,810 - +0.1 392,825 + -0.2 392,924 + -2.4 393,369 - GFF2341 0.61 -1.6 393,632 + +1.2 393,632 + -2.1 393,802 + GFF2342 0.12 -0.0 393,802 + GFF2342 0.12 -2.2 393,803 - GFF2342 0.12 -1.3 393,803 - GFF2342 0.12 +1.1 393,803 - GFF2342 0.12 -0.7 393,803 - GFF2342 0.12 -0.3 393,803 - GFF2342 0.12 -1.0 393,934 + GFF2342 0.25 -1.0 393,935 - GFF2342 0.25 -0.9 393,997 + GFF2342 0.31 -0.6 393,998 - GFF2342 0.31 -1.7 394,609 - +0.7 394,683 + -0.3 394,683 + +1.4 394,684 - -0.2 394,684 - -0.9 395,250 - GFF2343 0.65 +0.1 395,334 + GFF2343 0.74 -1.8 395,334 + GFF2343 0.74 -1.3 395,335 - GFF2343 0.75 -1.3 395,335 - GFF2343 0.75 -1.1 395,558 - -0.3 395,558 - -2.1 395,558 - +0.9 395,558 - +0.0 395,558 - -0.2 395,558 - +0.5
Or see this region's nucleotide sequence