Strain Fitness in Variovorax sp. SCN45 around GFF2293

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2290 and GFF2291 are separated by 81 nucleotidesGFF2291 and GFF2292 are separated by 16 nucleotidesGFF2292 and GFF2293 are separated by 136 nucleotidesGFF2293 and GFF2294 are separated by 31 nucleotidesGFF2294 and GFF2295 are separated by 22 nucleotides GFF2290 - Chromosome partitioning protein ParA, at 346,026 to 346,646 GFF2290 GFF2291 - Nodulation protein N-related dehydratase, at 346,728 to 347,189 GFF2291 GFF2292 - hypothetical protein, at 347,206 to 347,499 GFF2292 GFF2293 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 347,636 to 348,097 GFF2293 GFF2294 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 348,129 to 348,854 GFF2294 GFF2295 - Malonyl-[acyl-carrier protein] O-methyltransferase (EC 2.1.1.197), at 348,877 to 349,791 GFF2295 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 346.998 kb on + strand, within GFF2291at 346.998 kb on + strand, within GFF2291at 346.998 kb on + strand, within GFF2291at 346.999 kb on - strand, within GFF2291at 346.999 kb on - strand, within GFF2291at 346.999 kb on - strand, within GFF2291at 347.042 kb on + strand, within GFF2291at 347.207 kb on + strandat 347.207 kb on + strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.234 kb on + strandat 347.234 kb on + strandat 347.235 kb on - strandat 347.235 kb on - strandat 347.946 kb on + strand, within GFF2293at 347.946 kb on + strand, within GFF2293at 347.946 kb on + strand, within GFF2293at 347.946 kb on + strand, within GFF2293at 347.947 kb on - strand, within GFF2293at 347.947 kb on - strand, within GFF2293at 348.041 kb on + strand, within GFF2293at 348.041 kb on + strand, within GFF2293at 348.041 kb on + strand, within GFF2293at 348.041 kb on + strand, within GFF2293at 348.042 kb on - strand, within GFF2293at 348.171 kb on - strandat 348.171 kb on - strandat 348.607 kb on + strand, within GFF2294at 348.607 kb on + strand, within GFF2294at 348.607 kb on + strand, within GFF2294at 348.607 kb on + strand, within GFF2294at 348.607 kb on + strand, within GFF2294at 348.607 kb on + strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.608 kb on - strand, within GFF2294at 348.862 kb on + strandat 348.862 kb on + strandat 348.862 kb on + strandat 348.862 kb on + strandat 348.862 kb on + strandat 348.862 kb on + strandat 348.863 kb on - strandat 348.863 kb on - strandat 348.863 kb on - strandat 348.863 kb on - strandat 348.863 kb on - strandat 348.863 kb on - strandat 348.864 kb on + strandat 348.864 kb on + strandat 348.864 kb on + strandat 348.864 kb on + strandat 348.864 kb on + strandat 348.864 kb on + strandat 348.865 kb on - strandat 348.865 kb on - strandat 348.865 kb on - strandat 348.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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346,998 + GFF2291 0.58 +0.2
346,998 + GFF2291 0.58 -0.5
346,998 + GFF2291 0.58 -0.3
346,999 - GFF2291 0.59 +0.1
346,999 - GFF2291 0.59 -0.1
346,999 - GFF2291 0.59 +0.8
347,042 + GFF2291 0.68 -0.1
347,207 + -0.2
347,207 + +0.4
347,208 - -0.4
347,208 - +0.4
347,208 - -0.1
347,208 - -0.3
347,208 - -0.2
347,208 - +0.3
347,208 - -0.4
347,208 - -0.3
347,208 - -0.1
347,208 - -0.1
347,208 - +0.1
347,208 - +0.1
347,234 + -0.6
347,234 + -0.3
347,235 - -0.2
347,235 - -0.4
347,946 + GFF2293 0.67 -2.2
347,946 + GFF2293 0.67 +1.3
347,946 + GFF2293 0.67 -0.1
347,946 + GFF2293 0.67 +0.3
347,947 - GFF2293 0.67 -0.1
347,947 - GFF2293 0.67 +0.7
348,041 + GFF2293 0.88 -0.7
348,041 + GFF2293 0.88 +0.2
348,041 + GFF2293 0.88 +0.7
348,041 + GFF2293 0.88 +0.4
348,042 - GFF2293 0.88 +0.5
348,171 - -0.4
348,171 - -0.2
348,607 + GFF2294 0.66 +0.5
348,607 + GFF2294 0.66 -0.2
348,607 + GFF2294 0.66 -0.9
348,607 + GFF2294 0.66 +0.3
348,607 + GFF2294 0.66 +0.1
348,607 + GFF2294 0.66 +1.7
348,608 - GFF2294 0.66 +0.4
348,608 - GFF2294 0.66 +0.1
348,608 - GFF2294 0.66 +2.1
348,608 - GFF2294 0.66 -0.6
348,608 - GFF2294 0.66 +0.2
348,608 - GFF2294 0.66 +1.4
348,608 - GFF2294 0.66 -0.6
348,608 - GFF2294 0.66 -0.9
348,608 - GFF2294 0.66 +1.0
348,608 - GFF2294 0.66 -0.2
348,608 - GFF2294 0.66 -0.3
348,862 + -0.1
348,862 + -0.2
348,862 + +0.3
348,862 + -1.0
348,862 + -0.1
348,862 + -0.4
348,863 - -0.4
348,863 - +0.1
348,863 - -0.2
348,863 - -0.6
348,863 - -0.1
348,863 - +0.5
348,864 + +1.4
348,864 + -0.9
348,864 + +0.1
348,864 + +0.1
348,864 + -1.3
348,864 + -0.1
348,865 - +0.3
348,865 - -0.7
348,865 - -1.0
348,865 - -0.3

Or see this region's nucleotide sequence