Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2279 and GFF2280 are separated by 31 nucleotides GFF2280 and GFF2281 are separated by 56 nucleotides GFF2281 and GFF2282 are separated by 22 nucleotides
GFF2279 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 333,713 to 334,753
GFF2279
GFF2280 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 334,785 to 335,921
GFF2280
GFF2281 - Short-chain dehydrogenase/reductase SDR, at 335,978 to 336,754
GFF2281
GFF2282 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 336,777 to 338,630
GFF2282
Position (kb) 334
335
336 Strain fitness (log2 ratio) -1
0
1 at 333.870 kb on + strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 334.090 kb on - strand, within GFF2279 at 334.326 kb on + strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.614 kb on + strand, within GFF2279 at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.696 kb on - strand at 334.696 kb on - strand at 334.696 kb on - strand at 334.786 kb on + strand at 334.787 kb on - strand at 334.787 kb on - strand at 334.847 kb on - strand at 334.858 kb on + strand at 335.051 kb on - strand, within GFF2280 at 335.051 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.216 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.231 kb on - strand, within GFF2280 at 335.444 kb on + strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.445 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.447 kb on - strand, within GFF2280 at 335.504 kb on - strand, within GFF2280 at 335.935 kb on + strand at 335.936 kb on - strand at 335.936 kb on - strand at 335.936 kb on - strand at 336.402 kb on + strand, within GFF2281 at 336.402 kb on + strand, within GFF2281 at 336.403 kb on - strand, within GFF2281
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 333,870 + GFF2279 0.15 +0.3 333,937 - GFF2279 0.22 -0.5 333,937 - GFF2279 0.22 +0.1 333,937 - GFF2279 0.22 -0.1 334,090 - GFF2279 0.36 +0.3 334,326 + GFF2279 0.59 +0.9 334,327 - GFF2279 0.59 -0.3 334,327 - GFF2279 0.59 -0.0 334,327 - GFF2279 0.59 +0.0 334,614 + GFF2279 0.87 -0.5 334,695 + +0.6 334,695 + +0.3 334,695 + +0.2 334,695 + -1.1 334,695 + -0.5 334,696 - -0.0 334,696 - -0.4 334,696 - +0.3 334,786 + -0.1 334,787 - -0.9 334,787 - -0.3 334,847 - -0.2 334,858 + +0.2 335,051 - GFF2280 0.23 -0.3 335,051 - GFF2280 0.23 +1.7 335,216 - GFF2280 0.38 -0.1 335,216 - GFF2280 0.38 +0.1 335,231 - GFF2280 0.39 +0.5 335,231 - GFF2280 0.39 -0.9 335,444 + GFF2280 0.58 -0.9 335,445 - GFF2280 0.58 -0.4 335,445 - GFF2280 0.58 +0.7 335,445 - GFF2280 0.58 -0.3 335,447 - GFF2280 0.58 -1.6 335,447 - GFF2280 0.58 -0.9 335,504 - GFF2280 0.63 -0.9 335,935 + -0.3 335,936 - -0.2 335,936 - +0.1 335,936 - -0.6 336,402 + GFF2281 0.55 +0.4 336,402 + GFF2281 0.55 +0.5 336,403 - GFF2281 0.55 +0.6
Or see this region's nucleotide sequence