Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2211 and GFF2212 are separated by 81 nucleotides GFF2212 and GFF2213 are separated by 15 nucleotides GFF2213 and GFF2214 are separated by 61 nucleotides GFF2214 and GFF2215 are separated by 414 nucleotides
GFF2211 - Flp pilus assembly protein RcpC/CpaB, at 273,600 to 274,595
GFF2211
GFF2212 - KEGG: prepilin peptidase CpaA , at 274,677 to 275,180
GFF2212
GFF2213 - Flp pilus assembly protein, pilin Flp, at 275,196 to 275,381
GFF2213
GFF2214 - Flp pilus assembly protein, pilin Flp, at 275,443 to 275,628
GFF2214
GFF2215 - L,D-transpeptidase, at 276,043 to 277,446
GFF2215
Position (kb) 274
275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 274.441 kb on + strand, within GFF2211 at 274.454 kb on - strand, within GFF2211 at 274.531 kb on + strand at 274.531 kb on + strand at 274.531 kb on + strand at 274.532 kb on - strand at 274.532 kb on - strand at 274.532 kb on - strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.612 kb on + strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.613 kb on - strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.678 kb on + strand at 274.679 kb on - strand at 274.679 kb on - strand at 274.679 kb on - strand at 274.679 kb on - strand at 274.726 kb on + strand at 274.726 kb on + strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.727 kb on - strand at 274.897 kb on - strand, within GFF2212 at 274.981 kb on + strand, within GFF2212 at 274.981 kb on + strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 274.982 kb on - strand, within GFF2212 at 275.137 kb on + strand at 275.137 kb on + strand at 275.137 kb on + strand at 275.137 kb on + strand at 275.137 kb on + strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.138 kb on - strand at 275.151 kb on + strand at 275.151 kb on + strand at 275.151 kb on + strand at 275.151 kb on + strand at 275.152 kb on - strand at 275.152 kb on - strand at 275.152 kb on - strand at 275.152 kb on - strand at 275.214 kb on + strand at 275.214 kb on + strand at 275.214 kb on + strand at 275.215 kb on - strand, within GFF2213 at 275.215 kb on - strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.230 kb on + strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.231 kb on - strand, within GFF2213 at 275.270 kb on + strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.271 kb on - strand, within GFF2213 at 275.323 kb on + strand, within GFF2213 at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.376 kb on - strand at 275.444 kb on + strand at 275.444 kb on + strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.445 kb on - strand at 275.475 kb on + strand, within GFF2214 at 275.476 kb on - strand, within GFF2214 at 275.476 kb on - strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.477 kb on + strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.478 kb on - strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.532 kb on + strand, within GFF2214 at 275.533 kb on - strand, within GFF2214 at 275.562 kb on + strand, within GFF2214 at 275.563 kb on - strand, within GFF2214 at 275.570 kb on + strand, within GFF2214 at 275.613 kb on + strand at 275.634 kb on - strand at 275.645 kb on + strand at 275.645 kb on + strand at 275.645 kb on + strand at 275.645 kb on + strand at 275.652 kb on + strand at 275.677 kb on + strand at 275.677 kb on + strand at 275.677 kb on + strand at 275.677 kb on + strand at 275.678 kb on - strand at 275.678 kb on - strand at 275.679 kb on + strand at 275.680 kb on - strand at 275.680 kb on - strand at 275.680 kb on - strand at 275.680 kb on - strand at 275.680 kb on - strand at 275.686 kb on + strand at 275.686 kb on + strand at 275.687 kb on - strand at 275.687 kb on - strand at 275.696 kb on + strand at 275.696 kb on + strand at 275.697 kb on - strand at 275.697 kb on - strand at 275.697 kb on - strand at 275.697 kb on - strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.728 kb on + strand at 275.729 kb on - strand at 275.729 kb on - strand at 275.729 kb on - strand at 275.729 kb on - strand at 275.737 kb on + strand at 275.738 kb on - strand at 275.738 kb on - strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.750 kb on + strand at 275.751 kb on - strand at 275.751 kb on - strand at 275.751 kb on - strand at 275.751 kb on - strand at 275.751 kb on - strand at 275.810 kb on + strand at 275.811 kb on - strand at 275.881 kb on + strand at 275.882 kb on - strand at 275.882 kb on - strand at 275.908 kb on + strand at 275.908 kb on + strand at 275.909 kb on - strand at 275.909 kb on - strand at 275.909 kb on - strand at 275.909 kb on - strand at 275.920 kb on - strand at 275.920 kb on - strand at 275.920 kb on - strand at 275.930 kb on + strand at 275.937 kb on + strand at 275.937 kb on + strand at 275.937 kb on + strand at 275.937 kb on + strand at 275.937 kb on + strand at 275.938 kb on - strand at 275.938 kb on - strand at 275.938 kb on - strand at 275.938 kb on - strand at 275.938 kb on - strand at 275.938 kb on - strand at 275.941 kb on + strand at 275.941 kb on + strand at 275.941 kb on + strand at 275.941 kb on + strand at 275.941 kb on + strand at 275.942 kb on - strand at 275.942 kb on - strand at 275.942 kb on - strand at 275.942 kb on - strand at 275.942 kb on - strand at 275.942 kb on - strand at 275.942 kb on - strand at 275.942 kb on - strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.968 kb on + strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 275.969 kb on - strand at 276.098 kb on + strand at 276.098 kb on + strand at 276.098 kb on + strand at 276.099 kb on - strand at 276.150 kb on + strand at 276.150 kb on + strand at 276.151 kb on - strand at 276.151 kb on - strand at 276.151 kb on - strand at 276.151 kb on - strand at 276.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 274,441 + GFF2211 0.84 -0.5 274,454 - GFF2211 0.86 -0.0 274,531 + -0.1 274,531 + +0.9 274,531 + +0.6 274,532 - +0.1 274,532 - +0.3 274,532 - +0.1 274,612 + +0.2 274,612 + +0.4 274,612 + -0.4 274,612 + -0.2 274,612 + +0.4 274,613 - +0.7 274,613 - -0.5 274,613 - -0.3 274,613 - -0.7 274,613 - +1.7 274,613 - -0.0 274,613 - -1.4 274,613 - -0.5 274,613 - -0.5 274,613 - -0.3 274,613 - +0.7 274,678 + -0.1 274,678 + -0.1 274,678 + +0.5 274,678 + -0.1 274,678 + -0.1 274,679 - -0.1 274,679 - +0.0 274,679 - +0.1 274,679 - +0.3 274,726 + -0.2 274,726 + +0.1 274,727 - +0.3 274,727 - -0.1 274,727 - -0.8 274,727 - -0.4 274,727 - +1.1 274,897 - GFF2212 0.44 -1.0 274,981 + GFF2212 0.60 -0.5 274,981 + GFF2212 0.60 -1.2 274,982 - GFF2212 0.61 -0.0 274,982 - GFF2212 0.61 +0.1 274,982 - GFF2212 0.61 +0.4 274,982 - GFF2212 0.61 -0.5 274,982 - GFF2212 0.61 -0.7 274,982 - GFF2212 0.61 -1.2 274,982 - GFF2212 0.61 -0.4 274,982 - GFF2212 0.61 +0.1 274,982 - GFF2212 0.61 -0.3 275,137 + -1.6 275,137 + +0.0 275,137 + -0.3 275,137 + -0.4 275,137 + -0.2 275,138 - +0.1 275,138 - -0.1 275,138 - +1.1 275,138 - -0.7 275,138 - +1.4 275,138 - +0.1 275,138 - -0.8 275,138 - -0.8 275,151 + +0.7 275,151 + +0.5 275,151 + -0.6 275,151 + +1.7 275,152 - -1.1 275,152 - +1.9 275,152 - -0.1 275,152 - -0.2 275,214 + +0.4 275,214 + -0.6 275,214 + -0.1 275,215 - GFF2213 0.10 -1.1 275,215 - GFF2213 0.10 -0.1 275,230 + GFF2213 0.18 -0.5 275,230 + GFF2213 0.18 -0.4 275,230 + GFF2213 0.18 +1.1 275,230 + GFF2213 0.18 +0.2 275,230 + GFF2213 0.18 +0.1 275,230 + GFF2213 0.18 -0.3 275,230 + GFF2213 0.18 -0.4 275,230 + GFF2213 0.18 -0.1 275,231 - GFF2213 0.19 +0.1 275,231 - GFF2213 0.19 +0.4 275,231 - GFF2213 0.19 -1.0 275,231 - GFF2213 0.19 -0.3 275,231 - GFF2213 0.19 -0.5 275,231 - GFF2213 0.19 -1.2 275,231 - GFF2213 0.19 -0.0 275,231 - GFF2213 0.19 -0.7 275,231 - GFF2213 0.19 +1.1 275,231 - GFF2213 0.19 -0.8 275,231 - GFF2213 0.19 -0.6 275,231 - GFF2213 0.19 +0.2 275,231 - GFF2213 0.19 +0.1 275,231 - GFF2213 0.19 -2.1 275,231 - GFF2213 0.19 +1.3 275,231 - GFF2213 0.19 -0.3 275,270 + GFF2213 0.40 +0.4 275,271 - GFF2213 0.40 -0.5 275,271 - GFF2213 0.40 -0.2 275,271 - GFF2213 0.40 -0.7 275,271 - GFF2213 0.40 +0.3 275,323 + GFF2213 0.68 +1.2 275,376 - -0.3 275,376 - +0.6 275,376 - -1.1 275,376 - -0.5 275,376 - -1.1 275,376 - +0.0 275,444 + -0.1 275,444 + -0.9 275,445 - +0.1 275,445 - -0.8 275,445 - -0.3 275,445 - -0.7 275,445 - -1.6 275,445 - +0.3 275,475 + GFF2214 0.17 -1.2 275,476 - GFF2214 0.18 +0.4 275,476 - GFF2214 0.18 -0.7 275,477 + GFF2214 0.18 -0.2 275,477 + GFF2214 0.18 -1.0 275,477 + GFF2214 0.18 +0.9 275,477 + GFF2214 0.18 -0.1 275,477 + GFF2214 0.18 +1.7 275,477 + GFF2214 0.18 +0.4 275,477 + GFF2214 0.18 +0.1 275,477 + GFF2214 0.18 -0.0 275,478 - GFF2214 0.19 -0.5 275,478 - GFF2214 0.19 -1.9 275,478 - GFF2214 0.19 +0.1 275,478 - GFF2214 0.19 -0.8 275,478 - GFF2214 0.19 +1.7 275,478 - GFF2214 0.19 +0.5 275,478 - GFF2214 0.19 +0.1 275,478 - GFF2214 0.19 -0.6 275,478 - GFF2214 0.19 -1.5 275,478 - GFF2214 0.19 -0.1 275,478 - GFF2214 0.19 -1.2 275,532 + GFF2214 0.48 -2.1 275,532 + GFF2214 0.48 -0.2 275,532 + GFF2214 0.48 -0.6 275,532 + GFF2214 0.48 -0.7 275,533 - GFF2214 0.48 +0.6 275,562 + GFF2214 0.64 -0.3 275,563 - GFF2214 0.65 +0.1 275,570 + GFF2214 0.68 -0.7 275,613 + +0.7 275,634 - -0.5 275,645 + -0.6 275,645 + -0.5 275,645 + -0.4 275,645 + -0.5 275,652 + -0.1 275,677 + +0.7 275,677 + -1.5 275,677 + +2.7 275,677 + -0.3 275,678 - -1.3 275,678 - -1.3 275,679 + +0.1 275,680 - -0.6 275,680 - -0.7 275,680 - -1.5 275,680 - -0.8 275,680 - -1.0 275,686 + -0.2 275,686 + +0.4 275,687 - -0.5 275,687 - +0.1 275,696 + +0.0 275,696 + -0.8 275,697 - +0.3 275,697 - -0.5 275,697 - -2.1 275,697 - -0.3 275,728 + -0.5 275,728 + -0.4 275,728 + +0.0 275,728 + +0.2 275,728 + -0.5 275,728 + -0.9 275,728 + +0.4 275,728 + +0.6 275,728 + -1.7 275,728 + -0.0 275,728 + -2.3 275,729 - +0.1 275,729 - +0.4 275,729 - -0.3 275,729 - -0.5 275,737 + +0.1 275,738 - +0.3 275,738 - -1.2 275,750 + -1.7 275,750 + -0.7 275,750 + -0.4 275,750 + -0.2 275,750 + +0.1 275,750 + +1.7 275,750 + +0.3 275,750 + -0.4 275,750 + -1.2 275,750 + -1.1 275,750 + -0.2 275,750 + -0.1 275,750 + -0.3 275,751 - +0.0 275,751 - +2.3 275,751 - +1.3 275,751 - +0.1 275,751 - -0.5 275,810 + +1.0 275,811 - +0.1 275,881 + +1.5 275,882 - +0.4 275,882 - -0.4 275,908 + +0.1 275,908 + -1.9 275,909 - -2.1 275,909 - -0.9 275,909 - -1.2 275,909 - +0.3 275,920 - -0.5 275,920 - -0.5 275,920 - +0.7 275,930 + +0.7 275,937 + -0.1 275,937 + -0.8 275,937 + +0.7 275,937 + +0.1 275,937 + -1.7 275,938 - +1.0 275,938 - -0.1 275,938 - -0.3 275,938 - -1.1 275,938 - -0.2 275,938 - -0.6 275,941 + -0.0 275,941 + +0.1 275,941 + +0.9 275,941 + +0.1 275,941 + -0.9 275,942 - -0.1 275,942 - +0.1 275,942 - -0.1 275,942 - -0.8 275,942 - -0.0 275,942 - +0.3 275,942 - -0.8 275,942 - -0.2 275,968 + -0.4 275,968 + +0.7 275,968 + -0.2 275,968 + -1.1 275,968 + -0.1 275,968 + +0.1 275,968 + +0.5 275,968 + +0.9 275,968 + -0.6 275,968 + -0.0 275,968 + -0.6 275,968 + +0.8 275,969 - -0.4 275,969 - +1.0 275,969 - -0.3 275,969 - -0.7 275,969 - -0.3 275,969 - -0.6 275,969 - -0.3 275,969 - +0.7 275,969 - -0.5 275,969 - -0.7 275,969 - -1.1 275,969 - +0.2 275,969 - +0.3 275,969 - -1.0 276,098 + +0.6 276,098 + -0.7 276,098 + +0.2 276,099 - +0.5 276,150 + -0.9 276,150 + +0.4 276,151 - -0.7 276,151 - -0.2 276,151 - -1.1 276,151 - -0.3 276,151 - +0.4
Or see this region's nucleotide sequence