Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF219 and GFF220 overlap by 4 nucleotides GFF220 and GFF221 are separated by 2 nucleotides GFF221 and GFF222 are separated by 21 nucleotides
GFF219 - GTP-binding protein TypA/BipA, at 243,079 to 244,917
GFF219
GFF220 - tRNA pseudouridine(55) synthase (EC 5.4.99.25), at 244,914 to 245,879
GFF220
GFF221 - Ribosome-binding factor A, at 245,882 to 246,253
GFF221
GFF222 - Translation initiation factor 2, at 246,275 to 249,256
GFF222
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.424 kb on + strand, within GFF219 at 244.425 kb on - strand, within GFF219 at 244.893 kb on + strand at 244.911 kb on + strand at 244.912 kb on - strand at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.329 kb on + strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.330 kb on - strand, within GFF220 at 245.458 kb on + strand, within GFF220 at 245.458 kb on + strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.459 kb on - strand, within GFF220 at 245.464 kb on + strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.465 kb on - strand, within GFF220 at 245.647 kb on + strand, within GFF220 at 245.647 kb on + strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.648 kb on - strand, within GFF220 at 245.883 kb on + strand at 245.884 kb on - strand at 245.884 kb on - strand at 245.884 kb on - strand at 246.276 kb on + strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand at 246.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 244,424 + GFF219 0.73 -1.5 244,425 - GFF219 0.73 -0.1 244,893 + -1.5 244,911 + -0.3 244,912 - +0.1 245,329 + GFF220 0.43 -2.0 245,329 + GFF220 0.43 -0.5 245,329 + GFF220 0.43 +0.1 245,329 + GFF220 0.43 -0.6 245,329 + GFF220 0.43 -0.7 245,329 + GFF220 0.43 -1.4 245,329 + GFF220 0.43 -0.9 245,329 + GFF220 0.43 -0.8 245,329 + GFF220 0.43 -0.3 245,329 + GFF220 0.43 -0.1 245,329 + GFF220 0.43 -1.2 245,329 + GFF220 0.43 -0.9 245,329 + GFF220 0.43 -0.7 245,329 + GFF220 0.43 +0.7 245,329 + GFF220 0.43 -0.3 245,330 - GFF220 0.43 +0.2 245,330 - GFF220 0.43 -1.2 245,330 - GFF220 0.43 -1.2 245,330 - GFF220 0.43 +0.8 245,330 - GFF220 0.43 -0.7 245,330 - GFF220 0.43 +0.3 245,458 + GFF220 0.56 +0.3 245,458 + GFF220 0.56 -0.7 245,459 - GFF220 0.56 -0.0 245,459 - GFF220 0.56 -0.7 245,459 - GFF220 0.56 -0.9 245,459 - GFF220 0.56 +0.1 245,459 - GFF220 0.56 -0.7 245,459 - GFF220 0.56 -0.7 245,459 - GFF220 0.56 -1.0 245,459 - GFF220 0.56 -0.3 245,464 + GFF220 0.57 -1.5 245,465 - GFF220 0.57 -0.9 245,465 - GFF220 0.57 -2.5 245,465 - GFF220 0.57 +0.8 245,465 - GFF220 0.57 +0.3 245,465 - GFF220 0.57 -1.1 245,465 - GFF220 0.57 -1.0 245,647 + GFF220 0.76 -0.4 245,647 + GFF220 0.76 -1.7 245,648 - GFF220 0.76 -0.2 245,648 - GFF220 0.76 -0.7 245,648 - GFF220 0.76 -0.6 245,648 - GFF220 0.76 -0.1 245,648 - GFF220 0.76 -2.4 245,883 + +0.3 245,884 - -1.5 245,884 - -0.2 245,884 - +2.1 246,276 + -1.2 246,277 - -0.0 246,277 - -0.9 246,277 - -0.2 246,277 - +0.1 246,277 - -0.5 246,277 - +0.4
Or see this region's nucleotide sequence