Strain Fitness in Variovorax sp. SCN45 around GFF2162

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2161 and GFF2162 are separated by 46 nucleotidesGFF2162 and GFF2163 are separated by 287 nucleotides GFF2161 - Dihydroorotase (EC 3.5.2.3), at 213,422 to 214,711 GFF2161 GFF2162 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 214,758 to 215,504 GFF2162 GFF2163 - hypothetical protein, at 215,792 to 216,883 GFF2163 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 213.932 kb on + strand, within GFF2161at 213.932 kb on + strand, within GFF2161at 213.932 kb on + strand, within GFF2161at 213.933 kb on - strand, within GFF2161at 213.933 kb on - strand, within GFF2161at 213.951 kb on - strand, within GFF2161at 214.236 kb on - strand, within GFF2161at 214.548 kb on + strand, within GFF2161at 214.548 kb on + strand, within GFF2161at 214.548 kb on - strand, within GFF2161at 214.549 kb on - strand, within GFF2161at 214.549 kb on - strand, within GFF2161at 214.549 kb on - strand, within GFF2161at 214.655 kb on - strandat 214.678 kb on + strandat 214.678 kb on + strandat 214.678 kb on + strandat 214.679 kb on - strandat 214.679 kb on - strandat 214.679 kb on - strandat 214.679 kb on - strandat 214.712 kb on + strandat 214.713 kb on - strandat 214.713 kb on - strandat 215.097 kb on + strand, within GFF2162at 215.097 kb on + strand, within GFF2162at 215.097 kb on + strand, within GFF2162at 215.097 kb on + strand, within GFF2162at 215.097 kb on + strand, within GFF2162at 215.097 kb on + strand, within GFF2162at 215.097 kb on + strand, within GFF2162at 215.097 kb on + strand, within GFF2162at 215.098 kb on - strand, within GFF2162at 215.098 kb on - strand, within GFF2162at 215.098 kb on - strand, within GFF2162at 215.098 kb on - strand, within GFF2162at 215.254 kb on + strand, within GFF2162at 215.255 kb on - strand, within GFF2162at 215.255 kb on - strand, within GFF2162at 215.334 kb on + strand, within GFF2162at 215.334 kb on + strand, within GFF2162at 215.334 kb on + strand, within GFF2162at 215.335 kb on - strand, within GFF2162at 215.335 kb on - strand, within GFF2162at 215.335 kb on - strand, within GFF2162at 215.335 kb on - strand, within GFF2162at 215.588 kb on + strandat 215.588 kb on + strandat 215.589 kb on - strandat 215.589 kb on - strandat 215.600 kb on - strandat 215.720 kb on + strandat 215.720 kb on + strandat 215.720 kb on + strandat 215.720 kb on + strandat 215.720 kb on + strandat 215.720 kb on + strandat 215.720 kb on + strandat 215.721 kb on - strandat 215.721 kb on - strandat 215.721 kb on - strandat 215.721 kb on - strandat 215.721 kb on - strandat 215.721 kb on - strandat 215.721 kb on - strandat 215.769 kb on + strandat 215.769 kb on + strandat 215.769 kb on + strandat 215.769 kb on + strandat 215.770 kb on - strandat 215.770 kb on - strandat 215.770 kb on - strandat 215.793 kb on + strandat 215.793 kb on + strandat 215.793 kb on + strandat 215.794 kb on - strandat 215.794 kb on - strandat 215.794 kb on - strandat 215.794 kb on - strandat 215.961 kb on + strand, within GFF2163at 215.962 kb on - strand, within GFF2163at 216.284 kb on + strand, within GFF2163at 216.284 kb on + strand, within GFF2163at 216.284 kb on + strand, within GFF2163at 216.285 kb on - strand, within GFF2163at 216.285 kb on - strand, within GFF2163at 216.285 kb on - strand, within GFF2163at 216.309 kb on + strand, within GFF2163at 216.337 kb on - strand, within GFF2163at 216.337 kb on - strand, within GFF2163at 216.396 kb on + strand, within GFF2163at 216.396 kb on + strand, within GFF2163at 216.396 kb on + strand, within GFF2163at 216.396 kb on + strand, within GFF2163at 216.396 kb on + strand, within GFF2163at 216.397 kb on - strand, within GFF2163at 216.397 kb on - strand, within GFF2163at 216.397 kb on - strand, within GFF2163at 216.397 kb on - strand, within GFF2163at 216.433 kb on - strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.471 kb on + strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163at 216.472 kb on - strand, within GFF2163

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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213,932 + GFF2161 0.40 -0.3
213,932 + GFF2161 0.40 -0.7
213,932 + GFF2161 0.40 -1.1
213,933 - GFF2161 0.40 +3.3
213,933 - GFF2161 0.40 +0.2
213,951 - GFF2161 0.41 -0.1
214,236 - GFF2161 0.63 -0.4
214,548 + GFF2161 0.87 -0.4
214,548 + GFF2161 0.87 -0.5
214,548 - GFF2161 0.87 -0.4
214,549 - GFF2161 0.87 -0.4
214,549 - GFF2161 0.87 -0.7
214,549 - GFF2161 0.87 +0.3
214,655 - -0.8
214,678 + +0.0
214,678 + +0.5
214,678 + +0.4
214,679 - +0.6
214,679 - -0.3
214,679 - -1.2
214,679 - -0.5
214,712 + -0.6
214,713 - -0.0
214,713 - -0.9
215,097 + GFF2162 0.45 +2.3
215,097 + GFF2162 0.45 -2.0
215,097 + GFF2162 0.45 +0.2
215,097 + GFF2162 0.45 -0.2
215,097 + GFF2162 0.45 -2.4
215,097 + GFF2162 0.45 -0.7
215,097 + GFF2162 0.45 +0.5
215,097 + GFF2162 0.45 -0.5
215,098 - GFF2162 0.46 -1.3
215,098 - GFF2162 0.46 -0.6
215,098 - GFF2162 0.46 +1.7
215,098 - GFF2162 0.46 -1.1
215,254 + GFF2162 0.66 +0.0
215,255 - GFF2162 0.67 -0.3
215,255 - GFF2162 0.67 -0.1
215,334 + GFF2162 0.77 -0.2
215,334 + GFF2162 0.77 -1.9
215,334 + GFF2162 0.77 -1.5
215,335 - GFF2162 0.77 -0.4
215,335 - GFF2162 0.77 -0.2
215,335 - GFF2162 0.77 -0.3
215,335 - GFF2162 0.77 -1.9
215,588 + -0.9
215,588 + -0.8
215,589 - -0.3
215,589 - -0.4
215,600 - +0.7
215,720 + -0.4
215,720 + -0.0
215,720 + -0.9
215,720 + -0.1
215,720 + -0.2
215,720 + +0.1
215,720 + +1.3
215,721 - +0.4
215,721 - -0.9
215,721 - -0.3
215,721 - -0.3
215,721 - -0.7
215,721 - -0.0
215,721 - -1.0
215,769 + -0.2
215,769 + -0.8
215,769 + -1.0
215,769 + -0.0
215,770 - -0.3
215,770 - +0.3
215,770 - -0.0
215,793 + +0.1
215,793 + -0.6
215,793 + +0.6
215,794 - -0.1
215,794 - -0.5
215,794 - -0.0
215,794 - -1.6
215,961 + GFF2163 0.15 -0.2
215,962 - GFF2163 0.16 +0.3
216,284 + GFF2163 0.45 +1.3
216,284 + GFF2163 0.45 -0.3
216,284 + GFF2163 0.45 -0.5
216,285 - GFF2163 0.45 -0.5
216,285 - GFF2163 0.45 +1.1
216,285 - GFF2163 0.45 +1.0
216,309 + GFF2163 0.47 -1.3
216,337 - GFF2163 0.50 +0.3
216,337 - GFF2163 0.50 -0.5
216,396 + GFF2163 0.55 -0.8
216,396 + GFF2163 0.55 -1.7
216,396 + GFF2163 0.55 -0.1
216,396 + GFF2163 0.55 -0.2
216,396 + GFF2163 0.55 +0.9
216,397 - GFF2163 0.55 +0.0
216,397 - GFF2163 0.55 -1.0
216,397 - GFF2163 0.55 -0.2
216,397 - GFF2163 0.55 -0.7
216,433 - GFF2163 0.59 -0.9
216,471 + GFF2163 0.62 -1.0
216,471 + GFF2163 0.62 -0.0
216,471 + GFF2163 0.62 -1.2
216,471 + GFF2163 0.62 +0.5
216,471 + GFF2163 0.62 -0.5
216,471 + GFF2163 0.62 -0.6
216,471 + GFF2163 0.62 +1.3
216,471 + GFF2163 0.62 +1.7
216,471 + GFF2163 0.62 +0.5
216,471 + GFF2163 0.62 -0.7
216,472 - GFF2163 0.62 +0.7
216,472 - GFF2163 0.62 +0.5
216,472 - GFF2163 0.62 +0.7
216,472 - GFF2163 0.62 -1.0
216,472 - GFF2163 0.62 -0.1
216,472 - GFF2163 0.62 -1.4
216,472 - GFF2163 0.62 -0.2
216,472 - GFF2163 0.62 +0.6
216,472 - GFF2163 0.62 -0.9
216,472 - GFF2163 0.62 -0.5
216,472 - GFF2163 0.62 +0.3
216,472 - GFF2163 0.62 -0.5

Or see this region's nucleotide sequence