Strain Fitness in Variovorax sp. SCN45 around GFF213

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF210 and GFF211 are separated by 19 nucleotidesGFF211 and GFF212 overlap by 1 nucleotidesGFF212 and GFF213 are separated by 63 nucleotidesGFF213 and GFF214 are separated by 99 nucleotidesGFF214 and GFF215 are separated by 15 nucleotides GFF210 - Putative transmembrane protein, at 237,140 to 237,673 GFF210 GFF211 - protein of unknown function UPF0125, at 237,693 to 238,028 GFF211 GFF212 - Ribosome association toxin RatA, at 238,028 to 238,474 GFF212 GFF213 - tmRNA-binding protein SmpB, at 238,538 to 239,014 GFF213 GFF214 - Putative transmembrane protein, at 239,114 to 239,494 GFF214 GFF215 - RNA polymerase sigma-54 factor RpoN, at 239,510 to 240,025 GFF215 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 237.671 kb on + strandat 237.671 kb on + strandat 237.671 kb on + strandat 237.671 kb on + strandat 237.671 kb on + strandat 237.672 kb on - strandat 237.672 kb on - strandat 237.672 kb on - strandat 237.672 kb on - strandat 237.672 kb on - strandat 237.672 kb on - strandat 237.698 kb on - strandat 237.698 kb on - strandat 237.746 kb on + strand, within GFF211at 237.746 kb on + strand, within GFF211at 237.747 kb on - strand, within GFF211at 237.747 kb on - strand, within GFF211at 237.747 kb on - strand, within GFF211at 238.041 kb on + strandat 238.041 kb on + strandat 238.041 kb on + strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.042 kb on - strandat 238.144 kb on - strand, within GFF212at 238.395 kb on + strand, within GFF212at 238.395 kb on + strand, within GFF212at 238.396 kb on - strand, within GFF212at 238.396 kb on - strand, within GFF212at 238.396 kb on - strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.440 kb on + strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.505 kb on - strandat 238.505 kb on - strandat 238.505 kb on - strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.596 kb on - strand, within GFF213at 238.596 kb on - strand, within GFF213at 238.596 kb on - strand, within GFF213at 238.601 kb on + strand, within GFF213at 238.601 kb on + strand, within GFF213at 238.601 kb on + strand, within GFF213at 238.602 kb on - strand, within GFF213at 238.602 kb on - strand, within GFF213at 238.602 kb on - strand, within GFF213at 238.694 kb on + strand, within GFF213at 238.695 kb on - strand, within GFF213at 238.856 kb on + strand, within GFF213at 238.856 kb on + strand, within GFF213at 238.856 kb on + strand, within GFF213at 238.856 kb on + strand, within GFF213at 239.039 kb on - strandat 239.039 kb on - strandat 239.039 kb on - strandat 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.415 kb on - strand, within GFF214at 239.415 kb on - strand, within GFF214at 239.417 kb on + strand, within GFF214at 239.417 kb on + strand, within GFF214at 239.417 kb on + strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.556 kb on - strandat 239.888 kb on + strand, within GFF215at 239.888 kb on + strand, within GFF215at 239.889 kb on - strand, within GFF215at 239.889 kb on - strand, within GFF215at 239.889 kb on - strand, within GFF215at 239.889 kb on - strand, within GFF215

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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237,671 + +0.2
237,671 + -0.4
237,671 + -0.6
237,671 + -1.1
237,671 + -1.0
237,672 - -1.0
237,672 - -0.7
237,672 - +0.5
237,672 - +0.0
237,672 - -0.6
237,672 - -0.3
237,698 - +0.1
237,698 - -0.4
237,746 + GFF211 0.16 -0.7
237,746 + GFF211 0.16 -0.0
237,747 - GFF211 0.16 -0.2
237,747 - GFF211 0.16 -0.6
237,747 - GFF211 0.16 -0.2
238,041 + +0.1
238,041 + -0.0
238,041 + +0.3
238,042 - -2.2
238,042 - -1.2
238,042 - -0.6
238,042 - -0.4
238,042 - -1.0
238,042 - -0.0
238,042 - +0.5
238,042 - -1.7
238,042 - -0.1
238,042 - +1.0
238,144 - GFF212 0.26 -0.9
238,395 + GFF212 0.82 -0.9
238,395 + GFF212 0.82 -0.7
238,396 - GFF212 0.82 +1.9
238,396 - GFF212 0.82 +1.3
238,396 - GFF212 0.82 -0.5
238,422 + GFF212 0.88 -1.5
238,422 + GFF212 0.88 -1.0
238,422 + GFF212 0.88 -0.4
238,422 + GFF212 0.88 -0.8
238,422 + GFF212 0.88 -0.1
238,422 + GFF212 0.88 -0.8
238,422 + GFF212 0.88 -0.7
238,422 + GFF212 0.88 -0.5
238,422 + GFF212 0.88 -0.7
238,422 + GFF212 0.88 -1.3
238,422 + GFF212 0.88 -0.7
238,422 + GFF212 0.88 -1.8
238,422 + GFF212 0.88 -0.7
238,422 + GFF212 0.88 -1.0
238,422 + GFF212 0.88 -1.3
238,422 + GFF212 0.88 -2.6
238,422 + GFF212 0.88 +0.6
238,422 + GFF212 0.88 -1.2
238,423 - GFF212 0.88 -1.1
238,423 - GFF212 0.88 -0.8
238,423 - GFF212 0.88 -0.9
238,423 - GFF212 0.88 -1.0
238,423 - GFF212 0.88 -1.0
238,423 - GFF212 0.88 -2.0
238,423 - GFF212 0.88 -0.6
238,423 - GFF212 0.88 +0.6
238,423 - GFF212 0.88 +0.7
238,423 - GFF212 0.88 -0.9
238,423 - GFF212 0.88 -0.8
238,423 - GFF212 0.88 +0.0
238,423 - GFF212 0.88 -0.8
238,423 - GFF212 0.88 -0.3
238,423 - GFF212 0.88 -1.5
238,423 - GFF212 0.88 +0.7
238,423 - GFF212 0.88 -0.0
238,423 - GFF212 0.88 -1.3
238,423 - GFF212 0.88 -1.0
238,440 + -0.6
238,474 + -1.7
238,474 + +0.6
238,474 + -0.2
238,504 + -0.9
238,504 + +0.2
238,504 + -2.4
238,504 + +1.3
238,504 + -0.1
238,504 + -0.4
238,505 - -0.4
238,505 - -0.7
238,505 - -0.0
238,558 + -0.3
238,558 + -0.4
238,558 + +0.6
238,558 + -2.2
238,558 + -0.9
238,558 + -2.2
238,558 + -0.4
238,558 + -0.7
238,558 + -0.8
238,559 - +0.1
238,559 - -1.3
238,559 - +0.3
238,559 - -0.8
238,559 - -0.4
238,559 - -1.4
238,559 - -1.0
238,559 - -2.0
238,596 - GFF213 0.12 +0.1
238,596 - GFF213 0.12 -2.8
238,596 - GFF213 0.12 +0.1
238,601 + GFF213 0.13 -0.5
238,601 + GFF213 0.13 -0.5
238,601 + GFF213 0.13 -2.9
238,602 - GFF213 0.13 -0.9
238,602 - GFF213 0.13 +1.3
238,602 - GFF213 0.13 -1.5
238,694 + GFF213 0.33 -1.3
238,695 - GFF213 0.33 -1.0
238,856 + GFF213 0.67 +0.1
238,856 + GFF213 0.67 -2.2
238,856 + GFF213 0.67 -1.2
238,856 + GFF213 0.67 -0.8
239,039 - +0.5
239,039 - -0.1
239,039 - -0.3
239,243 + GFF214 0.34 +0.1
239,243 + GFF214 0.34 +0.3
239,243 + GFF214 0.34 +0.3
239,243 + GFF214 0.34 -0.5
239,243 + GFF214 0.34 -0.8
239,244 - GFF214 0.34 -0.4
239,244 - GFF214 0.34 +0.5
239,244 - GFF214 0.34 -1.7
239,244 - GFF214 0.34 +1.6
239,244 - GFF214 0.34 +0.7
239,414 + GFF214 0.79 +0.5
239,414 + GFF214 0.79 -0.9
239,414 + GFF214 0.79 +0.2
239,414 + GFF214 0.79 +0.8
239,415 - GFF214 0.79 -0.1
239,415 - GFF214 0.79 -0.9
239,417 + GFF214 0.80 -0.5
239,417 + GFF214 0.80 -0.2
239,417 + GFF214 0.80 +0.3
239,418 - GFF214 0.80 +0.4
239,418 - GFF214 0.80 -0.3
239,418 - GFF214 0.80 +1.3
239,418 - GFF214 0.80 -0.4
239,418 - GFF214 0.80 +0.7
239,418 - GFF214 0.80 +0.1
239,556 - +0.7
239,888 + GFF215 0.73 -0.0
239,888 + GFF215 0.73 +0.1
239,889 - GFF215 0.73 +0.1
239,889 - GFF215 0.73 +0.3
239,889 - GFF215 0.73 +0.5
239,889 - GFF215 0.73 -0.8

Or see this region's nucleotide sequence