Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2081 and GFF2082 are separated by 273 nucleotides GFF2082 and GFF2083 are separated by 9 nucleotides GFF2083 and GFF2084 overlap by 4 nucleotides GFF2084 and GFF2085 overlap by 4 nucleotides
GFF2081 - no description, at 129,381 to 130,445
GFF2081
GFF2082 - transcriptional regulator, Crp/Fnr family, at 130,719 to 131,351
GFF2082
GFF2083 - putative periplasmic membrane protein, at 131,361 to 131,963
GFF2083
GFF2084 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 131,960 to 132,913
GFF2084
GFF2085 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 132,910 to 133,638
GFF2085
Position (kb) 131
132 Strain fitness (log2 ratio) -1
0
1
2 at 130.367 kb on - strand at 130.367 kb on - strand at 130.367 kb on - strand at 130.367 kb on - strand at 130.405 kb on + strand at 130.524 kb on + strand at 130.529 kb on + strand at 130.529 kb on + strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.743 kb on + strand at 130.851 kb on + strand, within GFF2082 at 130.851 kb on + strand, within GFF2082 at 130.852 kb on - strand, within GFF2082 at 130.852 kb on - strand, within GFF2082 at 130.852 kb on - strand, within GFF2082 at 130.924 kb on - strand, within GFF2082 at 130.930 kb on - strand, within GFF2082 at 131.133 kb on + strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.134 kb on - strand, within GFF2082 at 131.293 kb on - strand at 131.293 kb on - strand at 131.293 kb on - strand at 131.293 kb on - strand at 131.572 kb on + strand, within GFF2083 at 131.728 kb on + strand, within GFF2083 at 131.728 kb on + strand, within GFF2083 at 131.728 kb on + strand, within GFF2083 at 131.729 kb on - strand, within GFF2083 at 131.729 kb on - strand, within GFF2083 at 131.729 kb on - strand, within GFF2083 at 131.976 kb on + strand at 131.994 kb on + strand at 131.994 kb on + strand at 131.995 kb on - strand at 132.186 kb on + strand, within GFF2084 at 132.187 kb on - strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.522 kb on + strand, within GFF2084 at 132.522 kb on + strand, within GFF2084 at 132.523 kb on - strand, within GFF2084 at 132.523 kb on - strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.544 kb on - strand, within GFF2084 at 132.544 kb on - strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.597 kb on + strand, within GFF2084 at 132.598 kb on - strand, within GFF2084 at 132.639 kb on + strand, within GFF2084 at 132.640 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 130,367 - -0.2 130,367 - -0.2 130,367 - -1.5 130,367 - -0.5 130,405 + -0.4 130,524 + -0.5 130,529 + -0.3 130,529 + -0.3 130,743 + -1.0 130,743 + -0.4 130,743 + -0.3 130,743 + -0.4 130,851 + GFF2082 0.21 -0.3 130,851 + GFF2082 0.21 +0.1 130,852 - GFF2082 0.21 +0.2 130,852 - GFF2082 0.21 -0.4 130,852 - GFF2082 0.21 +1.4 130,924 - GFF2082 0.32 -0.5 130,930 - GFF2082 0.33 -0.7 131,133 + GFF2082 0.65 +1.0 131,134 - GFF2082 0.66 +2.3 131,134 - GFF2082 0.66 -0.1 131,134 - GFF2082 0.66 +0.5 131,134 - GFF2082 0.66 -0.4 131,293 - -0.1 131,293 - +0.0 131,293 - -0.1 131,293 - -1.3 131,572 + GFF2083 0.35 +0.4 131,728 + GFF2083 0.61 -0.4 131,728 + GFF2083 0.61 +0.3 131,728 + GFF2083 0.61 +0.8 131,729 - GFF2083 0.61 -1.2 131,729 - GFF2083 0.61 -0.6 131,729 - GFF2083 0.61 -0.2 131,976 + -0.3 131,994 + -0.4 131,994 + -0.0 131,995 - -0.0 132,186 + GFF2084 0.24 +0.7 132,187 - GFF2084 0.24 +1.0 132,303 + GFF2084 0.36 +0.2 132,303 + GFF2084 0.36 +0.8 132,303 + GFF2084 0.36 -1.5 132,303 + GFF2084 0.36 -0.3 132,304 - GFF2084 0.36 -0.3 132,304 - GFF2084 0.36 -0.7 132,304 - GFF2084 0.36 -0.3 132,304 - GFF2084 0.36 +0.1 132,304 - GFF2084 0.36 -0.3 132,522 + GFF2084 0.59 -0.6 132,522 + GFF2084 0.59 +1.1 132,523 - GFF2084 0.59 +0.4 132,523 - GFF2084 0.59 +1.0 132,534 + GFF2084 0.60 -0.1 132,534 + GFF2084 0.60 +0.4 132,534 + GFF2084 0.60 -1.0 132,535 - GFF2084 0.60 +0.0 132,535 - GFF2084 0.60 +0.7 132,535 - GFF2084 0.60 -0.1 132,535 - GFF2084 0.60 -0.6 132,535 - GFF2084 0.60 +0.0 132,544 - GFF2084 0.61 -0.7 132,544 - GFF2084 0.61 +0.2 132,576 + GFF2084 0.65 -0.4 132,576 + GFF2084 0.65 +0.1 132,576 + GFF2084 0.65 +0.7 132,576 + GFF2084 0.65 +0.3 132,577 - GFF2084 0.65 -0.1 132,577 - GFF2084 0.65 -0.3 132,577 - GFF2084 0.65 -0.8 132,577 - GFF2084 0.65 -0.4 132,577 - GFF2084 0.65 -0.7 132,597 + GFF2084 0.67 -0.3 132,598 - GFF2084 0.67 +0.1 132,639 + GFF2084 0.71 -0.1 132,640 - GFF2084 0.71 +0.4 132,670 - GFF2084 0.74 -1.1 132,670 - GFF2084 0.74 -0.5 132,670 - GFF2084 0.74 -1.3
Or see this region's nucleotide sequence