Strain Fitness in Variovorax sp. SCN45 around GFF2036

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2035 and GFF2036 are separated by 143 nucleotidesGFF2036 and GFF2037 are separated by 36 nucleotides GFF2035 - N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14), at 82,977 to 84,185 GFF2035 GFF2036 - Ornithine cyclodeaminase (EC 4.3.1.12), at 84,329 to 85,378 GFF2036 GFF2037 - Acetylpolyamine aminohydrolase, at 85,415 to 86,455 GFF2037 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 83.874 kb on - strand, within GFF2035at 83.874 kb on - strand, within GFF2035at 83.874 kb on - strand, within GFF2035at 83.889 kb on + strand, within GFF2035at 83.889 kb on + strand, within GFF2035at 83.889 kb on + strand, within GFF2035at 83.889 kb on + strand, within GFF2035at 83.889 kb on + strand, within GFF2035at 83.889 kb on + strand, within GFF2035at 83.890 kb on - strand, within GFF2035at 83.890 kb on - strand, within GFF2035at 83.890 kb on - strand, within GFF2035at 83.890 kb on - strand, within GFF2035at 83.890 kb on - strand, within GFF2035at 83.890 kb on - strand, within GFF2035at 83.901 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.048 kb on + strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.049 kb on - strand, within GFF2035at 84.184 kb on - strandat 84.184 kb on - strandat 84.184 kb on - strandat 84.184 kb on - strandat 84.191 kb on + strandat 84.192 kb on - strandat 84.524 kb on + strand, within GFF2036at 84.525 kb on - strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.536 kb on + strand, within GFF2036at 84.537 kb on - strand, within GFF2036at 84.537 kb on - strand, within GFF2036at 84.938 kb on + strand, within GFF2036at 85.073 kb on + strand, within GFF2036at 85.073 kb on + strand, within GFF2036at 85.073 kb on + strand, within GFF2036at 85.074 kb on - strand, within GFF2036at 85.074 kb on - strand, within GFF2036at 85.229 kb on + strand, within GFF2036at 85.229 kb on + strand, within GFF2036at 85.230 kb on - strand, within GFF2036at 85.230 kb on - strand, within GFF2036at 85.244 kb on + strand, within GFF2036at 85.244 kb on + strand, within GFF2036at 85.244 kb on + strand, within GFF2036at 85.245 kb on - strand, within GFF2036at 85.245 kb on - strand, within GFF2036at 85.245 kb on - strand, within GFF2036at 85.427 kb on + strandat 85.427 kb on + strandat 85.427 kb on + strandat 85.427 kb on + strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.428 kb on - strandat 85.614 kb on - strand, within GFF2037at 85.614 kb on - strand, within GFF2037at 85.623 kb on - strand, within GFF2037at 85.695 kb on - strand, within GFF2037at 85.695 kb on - strand, within GFF2037at 86.012 kb on + strand, within GFF2037at 86.012 kb on + strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.046 kb on - strand, within GFF2037at 86.046 kb on - strand, within GFF2037at 86.099 kb on + strand, within GFF2037at 86.099 kb on + strand, within GFF2037at 86.100 kb on - strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.328 kb on - strand, within GFF2037

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
83,874 - GFF2035 0.74 -0.8
83,874 - GFF2035 0.74 -0.3
83,874 - GFF2035 0.74 +0.5
83,889 + GFF2035 0.75 -0.8
83,889 + GFF2035 0.75 -0.6
83,889 + GFF2035 0.75 -0.8
83,889 + GFF2035 0.75 -0.6
83,889 + GFF2035 0.75 -0.7
83,889 + GFF2035 0.75 -1.3
83,890 - GFF2035 0.76 -1.9
83,890 - GFF2035 0.76 +0.3
83,890 - GFF2035 0.76 +0.5
83,890 - GFF2035 0.76 -0.6
83,890 - GFF2035 0.76 -0.3
83,890 - GFF2035 0.76 -0.6
83,901 + GFF2035 0.76 +0.0
84,048 + GFF2035 0.89 -0.0
84,048 + GFF2035 0.89 -0.1
84,048 + GFF2035 0.89 -0.6
84,048 + GFF2035 0.89 +0.2
84,048 + GFF2035 0.89 +0.0
84,048 + GFF2035 0.89 -0.4
84,048 + GFF2035 0.89 -0.8
84,048 + GFF2035 0.89 +0.2
84,048 + GFF2035 0.89 +0.1
84,049 - GFF2035 0.89 -0.1
84,049 - GFF2035 0.89 +0.6
84,049 - GFF2035 0.89 -0.7
84,049 - GFF2035 0.89 +0.5
84,049 - GFF2035 0.89 +1.5
84,049 - GFF2035 0.89 -0.3
84,049 - GFF2035 0.89 -1.0
84,049 - GFF2035 0.89 -0.9
84,049 - GFF2035 0.89 -1.1
84,049 - GFF2035 0.89 +0.4
84,049 - GFF2035 0.89 -0.9
84,049 - GFF2035 0.89 -0.9
84,049 - GFF2035 0.89 -1.5
84,049 - GFF2035 0.89 -0.4
84,049 - GFF2035 0.89 -1.6
84,049 - GFF2035 0.89 -0.6
84,049 - GFF2035 0.89 +0.1
84,184 - -0.7
84,184 - -0.6
84,184 - +0.1
84,184 - +0.7
84,191 + -0.1
84,192 - -0.6
84,524 + GFF2036 0.19 +0.0
84,525 - GFF2036 0.19 -1.8
84,536 + GFF2036 0.20 -0.6
84,536 + GFF2036 0.20 -0.4
84,536 + GFF2036 0.20 +0.1
84,536 + GFF2036 0.20 -0.2
84,537 - GFF2036 0.20 -0.9
84,537 - GFF2036 0.20 -1.2
84,938 + GFF2036 0.58 +0.1
85,073 + GFF2036 0.71 -0.0
85,073 + GFF2036 0.71 +1.4
85,073 + GFF2036 0.71 +0.0
85,074 - GFF2036 0.71 -0.6
85,074 - GFF2036 0.71 -0.2
85,229 + GFF2036 0.86 +0.1
85,229 + GFF2036 0.86 -0.6
85,230 - GFF2036 0.86 -0.3
85,230 - GFF2036 0.86 -0.4
85,244 + GFF2036 0.87 -1.5
85,244 + GFF2036 0.87 -0.0
85,244 + GFF2036 0.87 +0.5
85,245 - GFF2036 0.87 +0.9
85,245 - GFF2036 0.87 -0.4
85,245 - GFF2036 0.87 -0.4
85,427 + -0.0
85,427 + -0.8
85,427 + +0.1
85,427 + +0.2
85,428 - +0.2
85,428 - -0.4
85,428 - -0.3
85,428 - -0.2
85,428 - -1.1
85,614 - GFF2037 0.19 +1.3
85,614 - GFF2037 0.19 +0.1
85,623 - GFF2037 0.20 -0.1
85,695 - GFF2037 0.27 -0.2
85,695 - GFF2037 0.27 -1.0
86,012 + GFF2037 0.57 +0.7
86,012 + GFF2037 0.57 -0.5
86,013 - GFF2037 0.57 +0.7
86,013 - GFF2037 0.57 -1.5
86,013 - GFF2037 0.57 -1.0
86,013 - GFF2037 0.57 -0.6
86,013 - GFF2037 0.57 -0.2
86,013 - GFF2037 0.57 -0.3
86,045 + GFF2037 0.61 -0.2
86,045 + GFF2037 0.61 -1.1
86,045 + GFF2037 0.61 +0.2
86,045 + GFF2037 0.61 +0.5
86,045 + GFF2037 0.61 +0.1
86,046 - GFF2037 0.61 -0.5
86,046 - GFF2037 0.61 +0.8
86,099 + GFF2037 0.66 -0.5
86,099 + GFF2037 0.66 +0.1
86,100 - GFF2037 0.66 +0.0
86,105 + GFF2037 0.66 -0.4
86,105 + GFF2037 0.66 -0.3
86,105 + GFF2037 0.66 -0.7
86,105 + GFF2037 0.66 -0.4
86,105 + GFF2037 0.66 -0.2
86,105 + GFF2037 0.66 -1.2
86,106 - GFF2037 0.66 -1.2
86,106 - GFF2037 0.66 +0.6
86,106 - GFF2037 0.66 +0.2
86,106 - GFF2037 0.66 -0.2
86,106 - GFF2037 0.66 +0.7
86,108 + GFF2037 0.67 +0.2
86,108 + GFF2037 0.67 +1.2
86,108 + GFF2037 0.67 +0.1
86,108 + GFF2037 0.67 +0.5
86,108 + GFF2037 0.67 -0.2
86,108 + GFF2037 0.67 -0.1
86,109 - GFF2037 0.67 +0.1
86,109 - GFF2037 0.67 +0.6
86,109 - GFF2037 0.67 +0.6
86,109 - GFF2037 0.67 -0.5
86,109 - GFF2037 0.67 -0.5
86,109 - GFF2037 0.67 -0.7
86,109 - GFF2037 0.67 -0.1
86,328 - GFF2037 0.88 -0.2

Or see this region's nucleotide sequence