Strain Fitness in Variovorax sp. SCN45 around GFF2023

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2022 and GFF2023 are separated by 137 nucleotidesGFF2023 and GFF2024 are separated by 3 nucleotidesGFF2024 and GFF2025 are separated by 15 nucleotides GFF2022 - Acyl-CoA dehydrogenase, at 65,923 to 67,092 GFF2022 GFF2023 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 67,230 to 68,150 GFF2023 GFF2024 - L-lysine permease, at 68,154 to 68,795 GFF2024 GFF2025 - Uncharacterized protein SCO3165, at 68,811 to 69,299 GFF2025 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2 3at 66.493 kb on + strand, within GFF2022at 66.493 kb on + strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.727 kb on + strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.853 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.899 kb on - strand, within GFF2022at 66.899 kb on - strand, within GFF2022at 66.964 kb on + strand, within GFF2022at 66.964 kb on + strand, within GFF2022at 66.965 kb on - strand, within GFF2022at 66.976 kb on + strandat 66.976 kb on + strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 66.977 kb on - strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.006 kb on + strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.007 kb on - strandat 67.010 kb on + strandat 67.010 kb on + strandat 67.010 kb on + strandat 67.087 kb on + strandat 67.087 kb on + strandat 67.088 kb on - strandat 67.137 kb on + strandat 67.137 kb on + strandat 67.138 kb on - strandat 67.138 kb on - strandat 67.138 kb on - strandat 67.155 kb on + strandat 67.155 kb on + strandat 67.156 kb on - strandat 67.156 kb on - strandat 67.458 kb on + strand, within GFF2023at 67.458 kb on + strand, within GFF2023at 67.459 kb on - strand, within GFF2023at 67.723 kb on - strand, within GFF2023at 67.875 kb on + strand, within GFF2023at 67.875 kb on + strand, within GFF2023at 67.876 kb on - strand, within GFF2023at 67.966 kb on - strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.010 kb on + strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.011 kb on - strand, within GFF2023at 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.076 kb on + strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.077 kb on - strandat 68.253 kb on + strand, within GFF2024at 68.253 kb on + strand, within GFF2024at 68.253 kb on + strand, within GFF2024at 68.253 kb on + strand, within GFF2024at 68.253 kb on + strand, within GFF2024at 68.254 kb on - strand, within GFF2024at 68.254 kb on - strand, within GFF2024at 68.397 kb on + strand, within GFF2024at 68.397 kb on + strand, within GFF2024at 68.397 kb on + strand, within GFF2024at 68.397 kb on + strand, within GFF2024at 68.398 kb on - strand, within GFF2024at 68.398 kb on - strand, within GFF2024at 68.398 kb on - strand, within GFF2024at 68.664 kb on + strand, within GFF2024at 68.664 kb on + strand, within GFF2024at 68.796 kb on + strandat 68.796 kb on + strandat 68.796 kb on + strandat 68.797 kb on - strandat 68.829 kb on - strandat 69.023 kb on + strand, within GFF2025at 69.023 kb on + strand, within GFF2025at 69.023 kb on + strand, within GFF2025at 69.023 kb on + strand, within GFF2025at 69.024 kb on - strand, within GFF2025at 69.024 kb on - strand, within GFF2025at 69.024 kb on - strand, within GFF2025at 69.024 kb on - strand, within GFF2025at 69.024 kb on - strand, within GFF2025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
66,493 + GFF2022 0.49 +1.0
66,493 + GFF2022 0.49 +0.6
66,494 - GFF2022 0.49 -1.0
66,494 - GFF2022 0.49 -0.2
66,494 - GFF2022 0.49 +0.3
66,637 + GFF2022 0.61 -0.0
66,637 + GFF2022 0.61 +0.2
66,637 + GFF2022 0.61 +0.1
66,638 - GFF2022 0.61 -0.8
66,638 - GFF2022 0.61 -0.5
66,638 - GFF2022 0.61 -0.7
66,638 - GFF2022 0.61 -0.7
66,727 + GFF2022 0.69 -0.3
66,728 - GFF2022 0.69 +0.1
66,728 - GFF2022 0.69 -0.2
66,728 - GFF2022 0.69 +0.1
66,853 + GFF2022 0.79 +1.7
66,898 + GFF2022 0.83 +0.6
66,898 + GFF2022 0.83 -0.1
66,898 + GFF2022 0.83 +0.2
66,898 + GFF2022 0.83 -0.6
66,898 + GFF2022 0.83 -0.8
66,899 - GFF2022 0.83 -0.0
66,899 - GFF2022 0.83 +0.4
66,964 + GFF2022 0.89 -2.5
66,964 + GFF2022 0.89 -0.1
66,965 - GFF2022 0.89 -0.2
66,976 + -0.7
66,976 + -1.0
66,977 - -0.4
66,977 - -0.1
66,977 - -0.4
66,977 - +0.6
66,977 - -0.4
66,977 - +0.1
66,977 - -0.2
66,977 - +0.1
67,006 + -0.2
67,006 + +0.0
67,006 + -1.4
67,006 + -0.3
67,006 + -0.3
67,006 + +0.1
67,006 + -1.1
67,006 + +0.9
67,006 + -0.2
67,006 + -0.9
67,006 + +0.7
67,007 - -1.6
67,007 - +0.3
67,007 - +0.9
67,007 - -0.5
67,007 - -0.7
67,010 + -0.5
67,010 + -0.3
67,010 + +1.7
67,087 + -0.5
67,087 + -0.1
67,088 - -0.5
67,137 + +0.3
67,137 + +0.5
67,138 - -0.5
67,138 - -0.2
67,138 - +3.0
67,155 + -0.8
67,155 + -0.3
67,156 - -0.4
67,156 - -0.1
67,458 + GFF2023 0.25 -1.6
67,458 + GFF2023 0.25 -1.1
67,459 - GFF2023 0.25 -1.3
67,723 - GFF2023 0.54 -1.1
67,875 + GFF2023 0.70 -1.0
67,875 + GFF2023 0.70 -1.3
67,876 - GFF2023 0.70 -0.9
67,966 - GFF2023 0.80 -0.3
68,010 + GFF2023 0.85 -0.3
68,010 + GFF2023 0.85 -0.6
68,010 + GFF2023 0.85 -0.5
68,010 + GFF2023 0.85 -1.1
68,011 - GFF2023 0.85 +0.3
68,011 - GFF2023 0.85 -2.0
68,011 - GFF2023 0.85 -1.9
68,011 - GFF2023 0.85 +1.0
68,011 - GFF2023 0.85 -0.4
68,011 - GFF2023 0.85 -0.6
68,076 + -1.0
68,076 + -0.4
68,076 + -1.3
68,076 + -0.8
68,076 + -0.3
68,076 + -0.0
68,077 - +0.4
68,077 - -0.3
68,077 - -0.6
68,077 - -0.3
68,077 - +0.6
68,077 - -0.7
68,077 - -0.2
68,253 + GFF2024 0.15 -0.6
68,253 + GFF2024 0.15 +0.1
68,253 + GFF2024 0.15 -1.4
68,253 + GFF2024 0.15 -0.2
68,253 + GFF2024 0.15 +2.0
68,254 - GFF2024 0.16 -1.9
68,254 - GFF2024 0.16 -0.1
68,397 + GFF2024 0.38 -0.9
68,397 + GFF2024 0.38 -0.6
68,397 + GFF2024 0.38 -1.3
68,397 + GFF2024 0.38 -0.8
68,398 - GFF2024 0.38 +0.2
68,398 - GFF2024 0.38 -0.2
68,398 - GFF2024 0.38 -0.1
68,664 + GFF2024 0.79 -0.9
68,664 + GFF2024 0.79 -0.3
68,796 + -0.3
68,796 + +0.1
68,796 + +0.3
68,797 - +0.9
68,829 - -0.3
69,023 + GFF2025 0.43 -1.7
69,023 + GFF2025 0.43 +0.0
69,023 + GFF2025 0.43 -1.0
69,023 + GFF2025 0.43 +0.1
69,024 - GFF2025 0.44 -0.3
69,024 - GFF2025 0.44 +0.7
69,024 - GFF2025 0.44 +0.1
69,024 - GFF2025 0.44 -0.6
69,024 - GFF2025 0.44 -0.6

Or see this region's nucleotide sequence