Strain Fitness in Variovorax sp. SCN45 around GFF2013

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2011 and GFF2012 are separated by 15 nucleotidesGFF2012 and GFF2013 are separated by 110 nucleotidesGFF2013 and GFF2014 are separated by 58 nucleotides GFF2011 - hypothetical protein, at 55,965 to 56,468 GFF2011 GFF2012 - Putative transmembrane protein, at 56,484 to 57,158 GFF2012 GFF2013 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 57,269 to 59,272 GFF2013 GFF2014 - hypothetical protein, at 59,331 to 60,296 GFF2014 Position (kb) 57 58 59 60Strain fitness (log2 ratio) -2 -1 0 1at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.307 kb on + strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.308 kb on - strand, within GFF2011at 56.559 kb on + strand, within GFF2012at 56.559 kb on + strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.560 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012at 56.593 kb on - strand, within GFF2012at 57.156 kb on + strandat 57.156 kb on + strandat 57.156 kb on + strandat 57.274 kb on + strandat 57.282 kb on + strandat 57.282 kb on + strandat 57.283 kb on - strandat 57.283 kb on - strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.286 kb on + strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.292 kb on + strandat 57.363 kb on - strandat 57.363 kb on - strandat 57.437 kb on - strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.446 kb on + strandat 57.447 kb on - strandat 57.872 kb on + strand, within GFF2013at 57.872 kb on + strand, within GFF2013at 57.872 kb on + strand, within GFF2013at 57.872 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.929 kb on + strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.930 kb on - strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.935 kb on + strand, within GFF2013at 57.936 kb on - strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.070 kb on + strand, within GFF2013at 58.071 kb on - strand, within GFF2013at 58.071 kb on - strand, within GFF2013at 58.071 kb on - strand, within GFF2013at 58.071 kb on - strand, within GFF2013at 58.352 kb on + strand, within GFF2013at 58.353 kb on - strand, within GFF2013at 58.353 kb on - strand, within GFF2013at 58.440 kb on - strand, within GFF2013at 58.440 kb on - strand, within GFF2013at 58.440 kb on - strand, within GFF2013at 58.769 kb on + strand, within GFF2013at 58.826 kb on + strand, within GFF2013at 58.826 kb on + strand, within GFF2013at 58.827 kb on - strand, within GFF2013at 58.827 kb on - strand, within GFF2013at 58.827 kb on - strand, within GFF2013at 59.295 kb on + strandat 59.508 kb on + strand, within GFF2014at 59.508 kb on + strand, within GFF2014at 59.883 kb on + strand, within GFF2014at 60.126 kb on + strand, within GFF2014at 60.127 kb on - strand, within GFF2014

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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56,307 + GFF2011 0.68 +0.5
56,307 + GFF2011 0.68 +0.1
56,307 + GFF2011 0.68 +0.7
56,307 + GFF2011 0.68 -0.2
56,307 + GFF2011 0.68 -0.1
56,308 - GFF2011 0.68 -1.2
56,308 - GFF2011 0.68 +0.0
56,308 - GFF2011 0.68 -1.0
56,308 - GFF2011 0.68 -0.5
56,308 - GFF2011 0.68 -0.1
56,308 - GFF2011 0.68 -1.0
56,559 + GFF2012 0.11 -1.3
56,559 + GFF2012 0.11 -0.3
56,560 - GFF2012 0.11 +0.1
56,560 - GFF2012 0.11 -0.3
56,560 - GFF2012 0.11 +0.5
56,560 - GFF2012 0.11 +0.4
56,593 - GFF2012 0.16 -0.1
56,593 - GFF2012 0.16 -0.4
57,156 + +0.1
57,156 + +0.6
57,156 + +0.1
57,274 + -0.2
57,282 + -0.6
57,282 + -0.7
57,283 - -0.8
57,283 - -0.5
57,286 + -0.8
57,286 + -0.9
57,286 + +0.3
57,286 + -1.2
57,287 - -0.8
57,287 - -0.9
57,287 - -1.3
57,287 - -0.9
57,287 - -0.5
57,287 - -0.9
57,292 + -0.4
57,363 - +0.4
57,363 - -0.4
57,437 - -0.5
57,446 + -1.8
57,446 + -0.9
57,446 + +0.9
57,446 + -1.2
57,446 + -0.5
57,446 + -0.9
57,446 + +0.1
57,447 - -0.6
57,872 + GFF2013 0.30 -0.4
57,872 + GFF2013 0.30 +1.2
57,872 + GFF2013 0.30 +0.1
57,872 + GFF2013 0.30 -0.4
57,929 + GFF2013 0.33 +0.2
57,929 + GFF2013 0.33 -2.2
57,929 + GFF2013 0.33 -1.7
57,929 + GFF2013 0.33 +0.1
57,929 + GFF2013 0.33 +0.1
57,929 + GFF2013 0.33 -0.8
57,929 + GFF2013 0.33 +0.3
57,929 + GFF2013 0.33 +0.5
57,929 + GFF2013 0.33 -0.3
57,929 + GFF2013 0.33 -0.9
57,929 + GFF2013 0.33 -1.0
57,929 + GFF2013 0.33 +0.7
57,929 + GFF2013 0.33 -0.3
57,929 + GFF2013 0.33 -0.0
57,929 + GFF2013 0.33 +0.0
57,929 + GFF2013 0.33 -0.8
57,929 + GFF2013 0.33 -0.6
57,929 + GFF2013 0.33 -0.9
57,929 + GFF2013 0.33 +0.7
57,929 + GFF2013 0.33 +0.4
57,929 + GFF2013 0.33 -0.9
57,929 + GFF2013 0.33 -0.7
57,929 + GFF2013 0.33 -0.9
57,929 + GFF2013 0.33 +0.1
57,929 + GFF2013 0.33 -1.0
57,929 + GFF2013 0.33 -0.3
57,929 + GFF2013 0.33 -1.9
57,929 + GFF2013 0.33 -1.5
57,930 - GFF2013 0.33 -1.3
57,930 - GFF2013 0.33 +0.0
57,930 - GFF2013 0.33 -1.0
57,930 - GFF2013 0.33 -1.0
57,930 - GFF2013 0.33 +0.1
57,930 - GFF2013 0.33 -0.1
57,930 - GFF2013 0.33 +0.4
57,930 - GFF2013 0.33 -1.7
57,930 - GFF2013 0.33 +0.3
57,930 - GFF2013 0.33 -0.3
57,930 - GFF2013 0.33 +0.1
57,930 - GFF2013 0.33 -0.9
57,930 - GFF2013 0.33 -0.8
57,930 - GFF2013 0.33 -0.3
57,930 - GFF2013 0.33 +1.7
57,930 - GFF2013 0.33 -1.2
57,930 - GFF2013 0.33 -1.0
57,930 - GFF2013 0.33 -0.0
57,935 + GFF2013 0.33 -0.6
57,935 + GFF2013 0.33 -0.0
57,935 + GFF2013 0.33 -0.8
57,935 + GFF2013 0.33 -0.3
57,935 + GFF2013 0.33 -1.1
57,936 - GFF2013 0.33 +0.7
58,070 + GFF2013 0.40 +0.1
58,070 + GFF2013 0.40 -0.6
58,070 + GFF2013 0.40 -0.5
58,070 + GFF2013 0.40 -0.6
58,070 + GFF2013 0.40 -0.3
58,070 + GFF2013 0.40 +0.4
58,071 - GFF2013 0.40 -1.5
58,071 - GFF2013 0.40 +0.2
58,071 - GFF2013 0.40 -0.4
58,071 - GFF2013 0.40 +0.7
58,352 + GFF2013 0.54 +1.0
58,353 - GFF2013 0.54 -1.4
58,353 - GFF2013 0.54 -1.3
58,440 - GFF2013 0.58 -1.3
58,440 - GFF2013 0.58 -0.0
58,440 - GFF2013 0.58 -0.5
58,769 + GFF2013 0.75 -0.2
58,826 + GFF2013 0.78 -1.2
58,826 + GFF2013 0.78 +0.0
58,827 - GFF2013 0.78 -0.8
58,827 - GFF2013 0.78 +0.1
58,827 - GFF2013 0.78 -2.0
59,295 + -1.6
59,508 + GFF2014 0.18 -0.4
59,508 + GFF2014 0.18 -1.1
59,883 + GFF2014 0.57 -0.5
60,126 + GFF2014 0.82 +1.7
60,127 - GFF2014 0.82 -0.2

Or see this region's nucleotide sequence