Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1967 and GFF1968 are separated by 8 nucleotides GFF1968 and GFF1969 overlap by 4 nucleotides GFF1969 and GFF1970 are separated by 64 nucleotides
GFF1967 - FAD linked oxidase-like, at 9,804 to 11,180
GFF1967
GFF1968 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 11,189 to 11,995
GFF1968
GFF1969 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 11,992 to 12,828
GFF1969
GFF1970 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 12,893 to 13,876
GFF1970
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 11.346 kb on + strand, within GFF1968 at 11.448 kb on + strand, within GFF1968 at 11.448 kb on + strand, within GFF1968 at 11.448 kb on + strand, within GFF1968 at 11.448 kb on + strand, within GFF1968 at 11.448 kb on + strand, within GFF1968 at 11.449 kb on - strand, within GFF1968 at 11.517 kb on + strand, within GFF1968 at 11.517 kb on + strand, within GFF1968 at 11.518 kb on - strand, within GFF1968 at 11.518 kb on - strand, within GFF1968 at 11.853 kb on + strand, within GFF1968 at 11.853 kb on + strand, within GFF1968 at 11.853 kb on + strand, within GFF1968 at 11.853 kb on + strand, within GFF1968 at 11.871 kb on + strand, within GFF1968 at 11.871 kb on + strand, within GFF1968 at 11.944 kb on - strand at 12.102 kb on - strand, within GFF1969 at 12.130 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.484 kb on + strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.485 kb on - strand, within GFF1969 at 12.738 kb on - strand, within GFF1969 at 12.933 kb on + strand at 12.934 kb on - strand at 12.934 kb on - strand at 12.934 kb on - strand at 12.934 kb on - strand at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.993 kb on + strand, within GFF1970 at 12.994 kb on - strand, within GFF1970 at 12.994 kb on - strand, within GFF1970 at 13.092 kb on + strand, within GFF1970 at 13.093 kb on - strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.167 kb on + strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.168 kb on - strand, within GFF1970 at 13.263 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.347 kb on + strand, within GFF1970 at 13.401 kb on + strand, within GFF1970 at 13.401 kb on + strand, within GFF1970 at 13.402 kb on - strand, within GFF1970 at 13.402 kb on - strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.713 kb on + strand, within GFF1970 at 13.714 kb on - strand, within GFF1970 at 13.714 kb on - strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.722 kb on + strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.723 kb on - strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.746 kb on + strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.747 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.774 kb on - strand, within GFF1970 at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.788 kb on + strand at 13.789 kb on - strand at 13.789 kb on - strand at 13.789 kb on - strand at 13.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 11,346 + GFF1968 0.19 +1.3 11,448 + GFF1968 0.32 -0.3 11,448 + GFF1968 0.32 -0.3 11,448 + GFF1968 0.32 -0.3 11,448 + GFF1968 0.32 +0.1 11,448 + GFF1968 0.32 -0.8 11,449 - GFF1968 0.32 +0.2 11,517 + GFF1968 0.41 -0.4 11,517 + GFF1968 0.41 +0.2 11,518 - GFF1968 0.41 -0.3 11,518 - GFF1968 0.41 -1.2 11,853 + GFF1968 0.82 -0.5 11,853 + GFF1968 0.82 -0.5 11,853 + GFF1968 0.82 +0.4 11,853 + GFF1968 0.82 +0.4 11,871 + GFF1968 0.85 -0.1 11,871 + GFF1968 0.85 -0.6 11,944 - -0.7 12,102 - GFF1969 0.13 +0.4 12,130 + GFF1969 0.16 -0.0 12,484 + GFF1969 0.59 +0.6 12,484 + GFF1969 0.59 +0.1 12,484 + GFF1969 0.59 -0.4 12,484 + GFF1969 0.59 +0.3 12,484 + GFF1969 0.59 +0.2 12,485 - GFF1969 0.59 +0.1 12,485 - GFF1969 0.59 +0.2 12,485 - GFF1969 0.59 +0.1 12,485 - GFF1969 0.59 -0.0 12,738 - GFF1969 0.89 +0.1 12,933 + +0.1 12,934 - -0.0 12,934 - -0.4 12,934 - +0.6 12,934 - -0.5 12,993 + GFF1970 0.10 +0.3 12,993 + GFF1970 0.10 -0.5 12,993 + GFF1970 0.10 -1.1 12,993 + GFF1970 0.10 -0.1 12,993 + GFF1970 0.10 +1.3 12,993 + GFF1970 0.10 +1.7 12,994 - GFF1970 0.10 -0.2 12,994 - GFF1970 0.10 -0.3 13,092 + GFF1970 0.20 -1.3 13,093 - GFF1970 0.20 -0.3 13,167 + GFF1970 0.28 -0.6 13,167 + GFF1970 0.28 -0.2 13,167 + GFF1970 0.28 -0.2 13,167 + GFF1970 0.28 -0.3 13,168 - GFF1970 0.28 -0.2 13,168 - GFF1970 0.28 -0.6 13,168 - GFF1970 0.28 +0.5 13,263 + GFF1970 0.38 -0.1 13,347 + GFF1970 0.46 +0.7 13,347 + GFF1970 0.46 -2.7 13,347 + GFF1970 0.46 -0.9 13,347 + GFF1970 0.46 -1.1 13,401 + GFF1970 0.52 -0.6 13,401 + GFF1970 0.52 -0.7 13,402 - GFF1970 0.52 -0.3 13,402 - GFF1970 0.52 -1.1 13,713 + GFF1970 0.83 -0.2 13,713 + GFF1970 0.83 +0.1 13,713 + GFF1970 0.83 -0.6 13,713 + GFF1970 0.83 -0.4 13,713 + GFF1970 0.83 +0.1 13,714 - GFF1970 0.83 +0.3 13,714 - GFF1970 0.83 +0.6 13,722 + GFF1970 0.84 -0.4 13,722 + GFF1970 0.84 -0.0 13,722 + GFF1970 0.84 +0.1 13,722 + GFF1970 0.84 +0.3 13,722 + GFF1970 0.84 +0.4 13,723 - GFF1970 0.84 -1.4 13,723 - GFF1970 0.84 -0.1 13,723 - GFF1970 0.84 +1.7 13,723 - GFF1970 0.84 -0.1 13,723 - GFF1970 0.84 +0.7 13,723 - GFF1970 0.84 +0.7 13,723 - GFF1970 0.84 +0.1 13,746 + GFF1970 0.87 -0.2 13,746 + GFF1970 0.87 -0.7 13,746 + GFF1970 0.87 +0.2 13,746 + GFF1970 0.87 +1.1 13,747 - GFF1970 0.87 +0.0 13,747 - GFF1970 0.87 -0.0 13,747 - GFF1970 0.87 -0.4 13,774 - GFF1970 0.90 -1.2 13,774 - GFF1970 0.90 -0.2 13,774 - GFF1970 0.90 +0.0 13,788 + +0.5 13,788 + -0.4 13,788 + -1.1 13,788 + +0.3 13,788 + -0.3 13,788 + -0.6 13,788 + -0.9 13,788 + +0.8 13,789 - +0.1 13,789 - -0.2 13,789 - -0.0 13,789 - -0.1
Or see this region's nucleotide sequence