Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1924 and GFF1925 are separated by 60 nucleotides GFF1925 and GFF1926 overlap by 4 nucleotides
GFF1924 - Aliphatic sulfonate monooxygenase family, FMNH2- or F420-dependent, at 604,448 to 605,569
GFF1924
GFF1925 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 605,630 to 606,454
GFF1925
GFF1926 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 606,451 to 607,458
GFF1926
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 604.781 kb on + strand, within GFF1924 at 604.782 kb on - strand, within GFF1924 at 604.782 kb on - strand, within GFF1924 at 604.847 kb on + strand, within GFF1924 at 604.865 kb on + strand, within GFF1924 at 604.866 kb on - strand, within GFF1924 at 604.866 kb on - strand, within GFF1924 at 604.887 kb on + strand, within GFF1924 at 604.887 kb on + strand, within GFF1924 at 605.000 kb on + strand, within GFF1924 at 605.000 kb on + strand, within GFF1924 at 605.001 kb on - strand, within GFF1924 at 605.045 kb on + strand, within GFF1924 at 605.046 kb on - strand, within GFF1924 at 605.046 kb on - strand, within GFF1924 at 605.252 kb on + strand, within GFF1924 at 605.429 kb on + strand, within GFF1924 at 605.429 kb on + strand, within GFF1924 at 605.432 kb on + strand, within GFF1924 at 605.433 kb on - strand, within GFF1924 at 605.434 kb on - strand, within GFF1924 at 605.496 kb on - strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.619 kb on + strand at 605.620 kb on - strand at 605.620 kb on - strand at 605.620 kb on - strand at 605.620 kb on - strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.703 kb on - strand at 606.044 kb on + strand, within GFF1925 at 606.045 kb on - strand, within GFF1925 at 606.269 kb on + strand, within GFF1925 at 606.269 kb on + strand, within GFF1925 at 606.270 kb on - strand, within GFF1925 at 606.673 kb on + strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.082 kb on - strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.366 kb on + strand at 607.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 604,781 + GFF1924 0.30 -0.8 604,782 - GFF1924 0.30 -0.8 604,782 - GFF1924 0.30 -0.1 604,847 + GFF1924 0.36 +0.5 604,865 + GFF1924 0.37 +0.9 604,866 - GFF1924 0.37 +0.3 604,866 - GFF1924 0.37 -0.8 604,887 + GFF1924 0.39 +0.0 604,887 + GFF1924 0.39 -0.1 605,000 + GFF1924 0.49 -0.1 605,000 + GFF1924 0.49 -0.6 605,001 - GFF1924 0.49 -0.1 605,045 + GFF1924 0.53 +0.1 605,046 - GFF1924 0.53 +1.2 605,046 - GFF1924 0.53 +0.6 605,252 + GFF1924 0.72 -0.0 605,429 + GFF1924 0.87 -0.2 605,429 + GFF1924 0.87 -0.4 605,432 + GFF1924 0.88 -2.1 605,433 - GFF1924 0.88 +0.3 605,434 - GFF1924 0.88 -0.1 605,496 - -0.3 605,619 + -1.3 605,619 + +0.6 605,619 + +0.5 605,619 + -0.2 605,619 + +0.4 605,619 + +2.8 605,619 + -0.0 605,620 - +0.2 605,620 - -0.7 605,620 - -0.5 605,620 - +0.3 605,702 + -0.2 605,702 + -0.2 605,703 - +2.8 606,044 + GFF1925 0.50 +2.3 606,045 - GFF1925 0.50 +0.3 606,269 + GFF1925 0.77 -1.0 606,269 + GFF1925 0.77 +0.5 606,270 - GFF1925 0.78 +0.2 606,673 + GFF1926 0.22 -0.6 606,674 - GFF1926 0.22 +1.8 606,674 - GFF1926 0.22 +0.5 607,051 + GFF1926 0.60 -0.7 607,051 + GFF1926 0.60 -0.1 607,082 - GFF1926 0.63 -1.1 607,114 + GFF1926 0.66 -0.2 607,114 + GFF1926 0.66 +0.4 607,114 + GFF1926 0.66 -0.4 607,115 - GFF1926 0.66 -0.1 607,115 - GFF1926 0.66 -0.6 607,220 - GFF1926 0.76 -0.8 607,220 - GFF1926 0.76 -0.6 607,265 - GFF1926 0.81 +0.0 607,265 - GFF1926 0.81 +0.6 607,366 + -0.9 607,367 - -0.6
Or see this region's nucleotide sequence