Strain Fitness in Variovorax sp. SCN45 around GFF1920

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1919 and GFF1920 overlap by 4 nucleotidesGFF1920 and GFF1921 overlap by 4 nucleotidesGFF1921 and GFF1922 overlap by 4 nucleotides GFF1919 - Rhodanese-related sulfurtransferase, 4 domains, at 598,805 to 600,475 GFF1919 GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077 GFF1920 GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063 GFF1921 GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304 GFF1922 Position (kb) 600 601 602Strain fitness (log2 ratio) -2 -1 0 1at 599.619 kb on + strand, within GFF1919at 599.620 kb on - strand, within GFF1919at 599.620 kb on - strand, within GFF1919at 599.945 kb on + strand, within GFF1919at 599.945 kb on + strand, within GFF1919at 599.945 kb on + strand, within GFF1919at 599.997 kb on + strand, within GFF1919at 600.207 kb on + strand, within GFF1919at 600.271 kb on - strand, within GFF1919at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.779 kb on + strand, within GFF1920at 600.780 kb on - strand, within GFF1920at 600.914 kb on + strand, within GFF1920at 601.274 kb on - strand, within GFF1921at 601.285 kb on + strand, within GFF1921at 601.286 kb on - strand, within GFF1921at 601.286 kb on - strand, within GFF1921at 601.468 kb on + strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.472 kb on - strand, within GFF1921at 601.472 kb on - strand, within GFF1921at 601.595 kb on - strand, within GFF1921at 601.595 kb on - strand, within GFF1921at 601.603 kb on + strand, within GFF1921at 601.603 kb on + strand, within GFF1921at 601.603 kb on + strand, within GFF1921at 601.604 kb on - strand, within GFF1921at 601.604 kb on - strand, within GFF1921at 601.862 kb on - strand, within GFF1921

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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599,619 + GFF1919 0.49 +0.2
599,620 - GFF1919 0.49 +0.3
599,620 - GFF1919 0.49 -0.4
599,945 + GFF1919 0.68 -0.8
599,945 + GFF1919 0.68 -0.5
599,945 + GFF1919 0.68 -0.7
599,997 + GFF1919 0.71 +0.9
600,207 + GFF1919 0.84 +1.1
600,271 - GFF1919 0.88 -0.2
600,581 + GFF1920 0.18 -0.7
600,581 + GFF1920 0.18 -0.8
600,581 + GFF1920 0.18 -1.2
600,581 + GFF1920 0.18 -0.3
600,581 + GFF1920 0.18 -2.1
600,582 - GFF1920 0.18 -0.2
600,582 - GFF1920 0.18 -1.1
600,582 - GFF1920 0.18 -0.7
600,582 - GFF1920 0.18 +0.5
600,585 + GFF1920 0.19 -0.1
600,585 + GFF1920 0.19 -0.3
600,585 + GFF1920 0.19 -0.7
600,586 - GFF1920 0.19 +0.1
600,586 - GFF1920 0.19 -0.5
600,586 - GFF1920 0.19 +1.2
600,779 + GFF1920 0.51 -0.8
600,780 - GFF1920 0.51 -1.2
600,914 + GFF1920 0.73 +0.2
601,274 - GFF1921 0.20 -0.6
601,285 + GFF1921 0.21 -0.2
601,286 - GFF1921 0.21 -0.2
601,286 - GFF1921 0.21 +0.3
601,468 + GFF1921 0.40 -0.3
601,469 - GFF1921 0.40 -0.2
601,469 - GFF1921 0.40 +1.0
601,469 - GFF1921 0.40 -0.6
601,469 - GFF1921 0.40 -0.2
601,469 - GFF1921 0.40 -1.6
601,472 - GFF1921 0.40 -0.4
601,472 - GFF1921 0.40 -0.2
601,595 - GFF1921 0.53 -0.6
601,595 - GFF1921 0.53 -0.2
601,603 + GFF1921 0.53 -0.6
601,603 + GFF1921 0.53 +0.2
601,603 + GFF1921 0.53 -0.2
601,604 - GFF1921 0.54 -0.2
601,604 - GFF1921 0.54 +0.5
601,862 - GFF1921 0.80 -0.6

Or see this region's nucleotide sequence