Strain Fitness in Variovorax sp. SCN45 around GFF1917

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1916 and GFF1917 are separated by 131 nucleotidesGFF1917 and GFF1918 are separated by 59 nucleotidesGFF1918 and GFF1919 are separated by 114 nucleotides GFF1916 - YpfJ protein, zinc metalloprotease superfamily, at 595,918 to 596,805 GFF1916 GFF1917 - ATP-dependent RNA helicase Bcep18194_A5658, at 596,937 to 598,406 GFF1917 GFF1918 - hypothetical protein, at 598,466 to 598,690 GFF1918 GFF1919 - Rhodanese-related sulfurtransferase, 4 domains, at 598,805 to 600,475 GFF1919 Position (kb) 596 597 598 599Strain fitness (log2 ratio) -2 -1 0 1 2at 596.064 kb on + strand, within GFF1916at 596.065 kb on - strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.248 kb on + strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.249 kb on - strand, within GFF1916at 596.329 kb on + strand, within GFF1916at 596.329 kb on + strand, within GFF1916at 596.329 kb on + strand, within GFF1916at 596.330 kb on - strand, within GFF1916at 596.330 kb on - strand, within GFF1916at 596.330 kb on - strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.353 kb on + strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.354 kb on - strand, within GFF1916at 596.372 kb on - strand, within GFF1916at 596.372 kb on - strand, within GFF1916at 596.422 kb on + strand, within GFF1916at 596.422 kb on + strand, within GFF1916at 596.422 kb on + strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.423 kb on - strand, within GFF1916at 596.753 kb on - strandat 596.848 kb on + strandat 596.849 kb on - strandat 596.860 kb on - strandat 596.959 kb on + strandat 596.959 kb on + strandat 596.959 kb on + strandat 596.960 kb on - strandat 597.003 kb on + strandat 597.004 kb on - strandat 597.240 kb on + strand, within GFF1917at 597.240 kb on + strand, within GFF1917at 597.241 kb on - strand, within GFF1917at 597.241 kb on - strand, within GFF1917at 597.241 kb on - strand, within GFF1917at 597.249 kb on + strand, within GFF1917at 597.249 kb on + strand, within GFF1917at 597.249 kb on + strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.250 kb on - strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.402 kb on + strand, within GFF1917at 597.403 kb on - strand, within GFF1917at 597.403 kb on - strand, within GFF1917at 597.474 kb on + strand, within GFF1917at 597.475 kb on - strand, within GFF1917at 597.549 kb on + strand, within GFF1917at 597.549 kb on + strand, within GFF1917at 597.550 kb on - strand, within GFF1917at 597.550 kb on - strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.933 kb on + strand, within GFF1917at 597.934 kb on - strand, within GFF1917at 598.273 kb on - strandat 598.273 kb on - strandat 598.273 kb on - strandat 598.492 kb on - strand, within GFF1918at 598.530 kb on + strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.721 kb on + strandat 598.721 kb on + strandat 598.722 kb on - strandat 598.782 kb on + strandat 598.782 kb on + strandat 598.782 kb on + strandat 598.783 kb on - strandat 598.783 kb on - strandat 598.783 kb on - strandat 598.900 kb on - strandat 598.914 kb on + strandat 598.914 kb on + strandat 598.915 kb on - strandat 598.915 kb on - strandat 598.915 kb on - strandat 598.953 kb on + strandat 598.954 kb on - strandat 599.119 kb on - strand, within GFF1919at 599.155 kb on - strand, within GFF1919at 599.214 kb on + strand, within GFF1919at 599.214 kb on + strand, within GFF1919at 599.215 kb on - strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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596,064 + GFF1916 0.16 -0.4
596,065 - GFF1916 0.17 -0.2
596,248 + GFF1916 0.37 -0.6
596,248 + GFF1916 0.37 +2.3
596,248 + GFF1916 0.37 -0.1
596,248 + GFF1916 0.37 +0.8
596,248 + GFF1916 0.37 +0.3
596,248 + GFF1916 0.37 +0.4
596,248 + GFF1916 0.37 +2.0
596,248 + GFF1916 0.37 +0.7
596,248 + GFF1916 0.37 +0.5
596,248 + GFF1916 0.37 -0.2
596,248 + GFF1916 0.37 -0.2
596,248 + GFF1916 0.37 -0.5
596,248 + GFF1916 0.37 -0.8
596,248 + GFF1916 0.37 -0.6
596,249 - GFF1916 0.37 +0.2
596,249 - GFF1916 0.37 -0.3
596,249 - GFF1916 0.37 -0.7
596,249 - GFF1916 0.37 +1.1
596,249 - GFF1916 0.37 -0.6
596,249 - GFF1916 0.37 +0.2
596,249 - GFF1916 0.37 -0.8
596,249 - GFF1916 0.37 -0.2
596,249 - GFF1916 0.37 -0.2
596,249 - GFF1916 0.37 +0.0
596,249 - GFF1916 0.37 +0.3
596,249 - GFF1916 0.37 +0.0
596,329 + GFF1916 0.46 +0.1
596,329 + GFF1916 0.46 -0.1
596,329 + GFF1916 0.46 -0.8
596,330 - GFF1916 0.46 -0.8
596,330 - GFF1916 0.46 -0.4
596,330 - GFF1916 0.46 -0.6
596,353 + GFF1916 0.49 -0.2
596,353 + GFF1916 0.49 +0.0
596,353 + GFF1916 0.49 -1.6
596,353 + GFF1916 0.49 -2.2
596,353 + GFF1916 0.49 +1.8
596,353 + GFF1916 0.49 -0.3
596,353 + GFF1916 0.49 -0.3
596,354 - GFF1916 0.49 -0.7
596,354 - GFF1916 0.49 -0.5
596,354 - GFF1916 0.49 -0.9
596,354 - GFF1916 0.49 -0.1
596,372 - GFF1916 0.51 -0.0
596,372 - GFF1916 0.51 +0.5
596,422 + GFF1916 0.57 -0.4
596,422 + GFF1916 0.57 -0.4
596,422 + GFF1916 0.57 +0.3
596,423 - GFF1916 0.57 +0.6
596,423 - GFF1916 0.57 -0.0
596,423 - GFF1916 0.57 +0.2
596,423 - GFF1916 0.57 -1.2
596,753 - +0.9
596,848 + -0.6
596,849 - -0.7
596,860 - -0.4
596,959 + +0.2
596,959 + -0.7
596,959 + -0.2
596,960 - +0.1
597,003 + -0.1
597,004 - +0.5
597,240 + GFF1917 0.21 -1.4
597,240 + GFF1917 0.21 +0.2
597,241 - GFF1917 0.21 -2.0
597,241 - GFF1917 0.21 -1.1
597,241 - GFF1917 0.21 -2.2
597,249 + GFF1917 0.21 -1.4
597,249 + GFF1917 0.21 -0.1
597,249 + GFF1917 0.21 -0.1
597,250 - GFF1917 0.21 -0.3
597,250 - GFF1917 0.21 -1.8
597,250 - GFF1917 0.21 +0.9
597,250 - GFF1917 0.21 -0.2
597,402 + GFF1917 0.32 -0.4
597,402 + GFF1917 0.32 -0.5
597,402 + GFF1917 0.32 -1.2
597,402 + GFF1917 0.32 -0.2
597,403 - GFF1917 0.32 -0.6
597,403 - GFF1917 0.32 -0.7
597,474 + GFF1917 0.37 -0.5
597,475 - GFF1917 0.37 +0.8
597,549 + GFF1917 0.42 -0.4
597,549 + GFF1917 0.42 +0.5
597,550 - GFF1917 0.42 -1.6
597,550 - GFF1917 0.42 +0.3
597,889 + GFF1917 0.65 +0.2
597,889 + GFF1917 0.65 -2.1
597,889 + GFF1917 0.65 -0.4
597,933 + GFF1917 0.68 -0.8
597,934 - GFF1917 0.68 -2.3
598,273 - +1.1
598,273 - +1.2
598,273 - +0.8
598,492 - GFF1918 0.12 -0.4
598,530 + GFF1918 0.28 +0.2
598,531 - GFF1918 0.29 -0.4
598,531 - GFF1918 0.29 +1.3
598,531 - GFF1918 0.29 -0.3
598,531 - GFF1918 0.29 -0.3
598,563 + GFF1918 0.43 -0.3
598,563 + GFF1918 0.43 +0.5
598,563 + GFF1918 0.43 -0.1
598,563 + GFF1918 0.43 -0.2
598,563 + GFF1918 0.43 +0.5
598,563 + GFF1918 0.43 +0.1
598,563 + GFF1918 0.43 -0.6
598,563 + GFF1918 0.43 -0.2
598,564 - GFF1918 0.44 +0.3
598,564 - GFF1918 0.44 -0.6
598,564 - GFF1918 0.44 -0.5
598,564 - GFF1918 0.44 -0.1
598,564 - GFF1918 0.44 -0.2
598,564 - GFF1918 0.44 -2.2
598,564 - GFF1918 0.44 +0.0
598,564 - GFF1918 0.44 -0.1
598,564 - GFF1918 0.44 -1.4
598,564 - GFF1918 0.44 -0.6
598,564 - GFF1918 0.44 +0.4
598,564 - GFF1918 0.44 -0.6
598,564 - GFF1918 0.44 +0.2
598,564 - GFF1918 0.44 +1.0
598,578 + GFF1918 0.50 +0.1
598,578 + GFF1918 0.50 +0.0
598,578 + GFF1918 0.50 -0.2
598,578 + GFF1918 0.50 -0.2
598,579 - GFF1918 0.50 +0.6
598,579 - GFF1918 0.50 -0.4
598,579 - GFF1918 0.50 +1.0
598,579 - GFF1918 0.50 -0.8
598,721 + -0.6
598,721 + -0.5
598,722 - -0.4
598,782 + +0.0
598,782 + +0.2
598,782 + +0.2
598,783 - -0.1
598,783 - -2.6
598,783 - +2.2
598,900 - +0.4
598,914 + -0.1
598,914 + +0.2
598,915 - -0.7
598,915 - +0.2
598,915 - -0.1
598,953 + -0.6
598,954 - +0.0
599,119 - GFF1919 0.19 +0.8
599,155 - GFF1919 0.21 +0.2
599,214 + GFF1919 0.24 -0.5
599,214 + GFF1919 0.24 -0.5
599,215 - GFF1919 0.25 +0.2
599,244 + GFF1919 0.26 -1.2
599,244 + GFF1919 0.26 +2.2
599,244 + GFF1919 0.26 -1.1
599,244 + GFF1919 0.26 -0.2
599,244 + GFF1919 0.26 +0.4
599,244 + GFF1919 0.26 +1.0
599,244 + GFF1919 0.26 +0.8
599,245 - GFF1919 0.26 -1.4
599,245 - GFF1919 0.26 +1.0
599,245 - GFF1919 0.26 -0.6
599,245 - GFF1919 0.26 -0.4
599,245 - GFF1919 0.26 -0.1
599,245 - GFF1919 0.26 +1.4

Or see this region's nucleotide sequence