Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1876 and GFF1877 are separated by 9 nucleotides GFF1877 and GFF1878 are separated by 33 nucleotides GFF1878 and GFF1879 are separated by 31 nucleotides
GFF1876 - Dihydrodipicolinate synthase family, at 549,594 to 550,487
GFF1876
GFF1877 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 550,497 to 551,279
GFF1877
GFF1878 - Bll6165 protein, at 551,313 to 551,723
GFF1878
GFF1879 - dicarboxylic acid transporter PcaT, at 551,755 to 553,101
GFF1879
Position (kb) 551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.335 kb on + strand, within GFF1876 at 550.335 kb on + strand, within GFF1876 at 550.335 kb on + strand, within GFF1876 at 550.335 kb on + strand, within GFF1876 at 550.336 kb on - strand, within GFF1876 at 550.336 kb on - strand, within GFF1876 at 550.336 kb on - strand, within GFF1876 at 550.336 kb on - strand, within GFF1876 at 550.490 kb on + strand at 550.490 kb on + strand at 550.490 kb on + strand at 550.491 kb on - strand at 550.951 kb on - strand, within GFF1877 at 551.287 kb on + strand at 551.287 kb on + strand at 551.295 kb on - strand at 551.539 kb on - strand, within GFF1878 at 551.550 kb on + strand, within GFF1878 at 551.550 kb on + strand, within GFF1878 at 551.551 kb on - strand, within GFF1878 at 551.756 kb on + strand at 551.756 kb on + strand at 551.756 kb on + strand at 551.757 kb on - strand at 551.757 kb on - strand at 551.757 kb on - strand at 551.757 kb on - strand at 551.757 kb on - strand at 551.774 kb on + strand at 551.775 kb on - strand at 551.775 kb on - strand at 551.775 kb on - strand at 551.775 kb on - strand at 551.837 kb on + strand at 551.837 kb on + strand at 551.837 kb on + strand at 551.838 kb on - strand at 551.838 kb on - strand at 551.838 kb on - strand at 551.843 kb on + strand at 551.843 kb on + strand at 551.844 kb on - strand at 551.844 kb on - strand at 551.844 kb on - strand at 551.844 kb on - strand at 551.844 kb on - strand at 551.844 kb on - strand at 551.849 kb on + strand at 551.849 kb on + strand at 551.850 kb on - strand at 551.850 kb on - strand at 551.850 kb on - strand at 551.850 kb on - strand at 551.889 kb on - strand at 551.889 kb on - strand at 552.002 kb on + strand, within GFF1879 at 552.002 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.185 kb on + strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.186 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.267 kb on - strand, within GFF1879 at 552.308 kb on + strand, within GFF1879 at 552.566 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.620 kb on + strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.621 kb on - strand, within GFF1879 at 552.717 kb on - strand, within GFF1879 at 552.717 kb on - strand, within GFF1879
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 550,335 + GFF1876 0.83 -0.3 550,335 + GFF1876 0.83 -0.9 550,335 + GFF1876 0.83 +0.2 550,335 + GFF1876 0.83 -1.0 550,336 - GFF1876 0.83 -0.2 550,336 - GFF1876 0.83 +0.0 550,336 - GFF1876 0.83 -1.0 550,336 - GFF1876 0.83 -0.1 550,490 + +1.2 550,490 + -1.2 550,490 + -0.5 550,491 - +0.7 550,951 - GFF1877 0.58 -0.1 551,287 + -0.2 551,287 + +1.2 551,295 - +0.3 551,539 - GFF1878 0.55 -0.8 551,550 + GFF1878 0.58 -0.5 551,550 + GFF1878 0.58 -0.3 551,551 - GFF1878 0.58 -0.6 551,756 + -0.4 551,756 + -1.2 551,756 + -0.9 551,757 - -0.1 551,757 - +0.0 551,757 - -0.8 551,757 - -0.3 551,757 - -0.5 551,774 + +0.1 551,775 - -0.3 551,775 - -0.1 551,775 - -1.4 551,775 - +0.2 551,837 + +0.4 551,837 + +1.1 551,837 + -0.4 551,838 - +0.1 551,838 - -0.3 551,838 - -0.9 551,843 + +0.7 551,843 + +0.0 551,844 - -0.2 551,844 - +0.3 551,844 - -0.4 551,844 - +0.8 551,844 - +0.8 551,844 - -0.8 551,849 + -0.4 551,849 + +0.2 551,850 - +0.9 551,850 - +0.0 551,850 - -0.2 551,850 - -0.3 551,889 - +0.8 551,889 - -0.4 552,002 + GFF1879 0.18 -0.1 552,002 + GFF1879 0.18 -0.6 552,185 + GFF1879 0.32 +0.5 552,185 + GFF1879 0.32 +0.4 552,185 + GFF1879 0.32 +0.6 552,185 + GFF1879 0.32 +0.8 552,185 + GFF1879 0.32 -1.3 552,185 + GFF1879 0.32 -0.1 552,185 + GFF1879 0.32 -0.1 552,185 + GFF1879 0.32 -0.4 552,185 + GFF1879 0.32 -1.1 552,185 + GFF1879 0.32 -0.8 552,185 + GFF1879 0.32 -0.4 552,186 - GFF1879 0.32 -0.8 552,186 - GFF1879 0.32 -0.1 552,186 - GFF1879 0.32 +0.4 552,186 - GFF1879 0.32 -0.5 552,186 - GFF1879 0.32 -1.0 552,186 - GFF1879 0.32 +0.2 552,186 - GFF1879 0.32 -0.7 552,186 - GFF1879 0.32 +2.2 552,186 - GFF1879 0.32 +0.2 552,186 - GFF1879 0.32 -0.1 552,186 - GFF1879 0.32 -0.4 552,186 - GFF1879 0.32 -0.5 552,186 - GFF1879 0.32 -1.8 552,267 - GFF1879 0.38 +0.3 552,267 - GFF1879 0.38 +0.3 552,267 - GFF1879 0.38 +0.6 552,267 - GFF1879 0.38 -0.4 552,267 - GFF1879 0.38 +0.3 552,267 - GFF1879 0.38 -0.3 552,267 - GFF1879 0.38 +0.7 552,267 - GFF1879 0.38 +0.2 552,308 + GFF1879 0.41 -0.2 552,566 + GFF1879 0.60 +1.1 552,620 + GFF1879 0.64 -0.1 552,620 + GFF1879 0.64 -1.4 552,620 + GFF1879 0.64 -1.4 552,620 + GFF1879 0.64 +0.8 552,620 + GFF1879 0.64 +1.2 552,620 + GFF1879 0.64 -0.4 552,620 + GFF1879 0.64 -0.5 552,621 - GFF1879 0.64 -0.3 552,621 - GFF1879 0.64 -0.6 552,621 - GFF1879 0.64 -0.5 552,621 - GFF1879 0.64 -0.5 552,621 - GFF1879 0.64 -1.3 552,717 - GFF1879 0.71 -0.5 552,717 - GFF1879 0.71 +0.0
Or see this region's nucleotide sequence