Strain Fitness in Variovorax sp. SCN45 around GFF1843

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1842 and GFF1843 are separated by 194 nucleotidesGFF1843 and GFF1844 are separated by 114 nucleotides GFF1842 - Transcriptional regulator, LysR family, at 512,112 to 513,092 GFF1842 GFF1843 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 513,287 to 514,570 GFF1843 GFF1844 - Nucleoside ABC transporter, ATP-binding protein, at 514,685 to 516,199 GFF1844 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 512.439 kb on + strand, within GFF1842at 512.439 kb on + strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.539 kb on - strand, within GFF1842at 512.539 kb on - strand, within GFF1842at 512.874 kb on + strand, within GFF1842at 512.874 kb on + strand, within GFF1842at 512.875 kb on - strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.476 kb on + strand, within GFF1843at 513.476 kb on + strand, within GFF1843at 513.486 kb on - strand, within GFF1843at 513.486 kb on - strand, within GFF1843at 513.525 kb on - strand, within GFF1843at 513.533 kb on + strand, within GFF1843at 513.534 kb on - strand, within GFF1843at 513.534 kb on - strand, within GFF1843at 513.557 kb on + strand, within GFF1843at 513.557 kb on + strand, within GFF1843at 513.557 kb on + strand, within GFF1843at 513.558 kb on - strand, within GFF1843at 513.558 kb on - strand, within GFF1843at 513.645 kb on + strand, within GFF1843at 513.654 kb on + strand, within GFF1843at 513.654 kb on + strand, within GFF1843at 514.178 kb on + strand, within GFF1843at 514.179 kb on - strand, within GFF1843at 514.299 kb on - strand, within GFF1843at 514.299 kb on - strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.420 kb on + strand, within GFF1843at 514.421 kb on - strand, within GFF1843at 514.421 kb on - strand, within GFF1843at 514.421 kb on - strand, within GFF1843at 514.425 kb on - strand, within GFF1843at 514.425 kb on - strand, within GFF1843at 514.425 kb on - strand, within GFF1843at 514.463 kb on + strandat 514.463 kb on + strandat 514.463 kb on + strandat 514.463 kb on + strandat 514.463 kb on + strandat 514.464 kb on - strandat 514.464 kb on - strandat 514.464 kb on - strandat 514.553 kb on + strandat 514.553 kb on + strandat 514.553 kb on + strandat 514.553 kb on + strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.554 kb on - strandat 514.626 kb on - strandat 514.626 kb on - strandat 514.631 kb on + strandat 514.631 kb on + strandat 514.631 kb on + strandat 514.632 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.782 kb on + strandat 514.783 kb on - strandat 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.838 kb on + strand, within GFF1844at 514.839 kb on - strand, within GFF1844at 514.839 kb on - strand, within GFF1844at 515.057 kb on + strand, within GFF1844at 515.057 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.258 kb on + strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844at 515.259 kb on - strand, within GFF1844

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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512,439 + GFF1842 0.33 -0.7
512,439 + GFF1842 0.33 -0.0
512,440 - GFF1842 0.33 +0.2
512,440 - GFF1842 0.33 -0.5
512,440 - GFF1842 0.33 +0.8
512,440 - GFF1842 0.33 +0.3
512,440 - GFF1842 0.33 -1.7
512,440 - GFF1842 0.33 +0.1
512,440 - GFF1842 0.33 -1.1
512,538 + GFF1842 0.43 +1.0
512,538 + GFF1842 0.43 -0.0
512,538 + GFF1842 0.43 -0.2
512,538 + GFF1842 0.43 -0.6
512,539 - GFF1842 0.44 -0.8
512,539 - GFF1842 0.44 -0.5
512,874 + GFF1842 0.78 -0.5
512,874 + GFF1842 0.78 -0.4
512,875 - GFF1842 0.78 -0.2
512,946 + GFF1842 0.85 -0.3
512,946 + GFF1842 0.85 -0.6
512,946 + GFF1842 0.85 +0.4
512,946 + GFF1842 0.85 -0.2
512,946 + GFF1842 0.85 -0.2
512,946 + GFF1842 0.85 -1.0
512,946 + GFF1842 0.85 -0.9
512,946 + GFF1842 0.85 -1.6
512,947 - GFF1842 0.85 -0.7
512,947 - GFF1842 0.85 +0.2
512,947 - GFF1842 0.85 +0.8
512,947 - GFF1842 0.85 -1.2
512,947 - GFF1842 0.85 -0.7
512,947 - GFF1842 0.85 +0.0
512,947 - GFF1842 0.85 +0.0
512,947 - GFF1842 0.85 +0.6
512,947 - GFF1842 0.85 -0.0
512,947 - GFF1842 0.85 +0.0
512,947 - GFF1842 0.85 -1.3
512,947 - GFF1842 0.85 +0.6
512,947 - GFF1842 0.85 -0.1
512,947 - GFF1842 0.85 +0.4
512,949 + GFF1842 0.85 +0.7
512,949 + GFF1842 0.85 +0.3
512,949 + GFF1842 0.85 +0.8
512,949 + GFF1842 0.85 -0.6
512,949 + GFF1842 0.85 +1.8
512,949 + GFF1842 0.85 +0.1
512,950 - GFF1842 0.85 -0.7
512,950 - GFF1842 0.85 -0.1
512,950 - GFF1842 0.85 -0.0
512,950 - GFF1842 0.85 -0.1
512,950 - GFF1842 0.85 -0.1
513,365 + -0.6
513,365 + -0.5
513,365 + -0.5
513,365 + +0.2
513,365 + -0.7
513,365 + -1.2
513,365 + -0.2
513,365 + +0.7
513,365 + -0.2
513,365 + -0.4
513,365 + +0.2
513,365 + -0.5
513,365 + -0.6
513,365 + +0.6
513,365 + -0.4
513,366 - -0.1
513,366 - +0.8
513,366 - -0.7
513,366 - -1.2
513,366 - -0.1
513,366 - +0.6
513,366 - -0.2
513,366 - -1.1
513,366 - -0.4
513,476 + GFF1843 0.15 +0.5
513,476 + GFF1843 0.15 -0.6
513,486 - GFF1843 0.15 +0.4
513,486 - GFF1843 0.15 -0.6
513,525 - GFF1843 0.19 +0.2
513,533 + GFF1843 0.19 -0.1
513,534 - GFF1843 0.19 +0.6
513,534 - GFF1843 0.19 -0.2
513,557 + GFF1843 0.21 +2.4
513,557 + GFF1843 0.21 -0.2
513,557 + GFF1843 0.21 +0.9
513,558 - GFF1843 0.21 +1.8
513,558 - GFF1843 0.21 -0.1
513,645 + GFF1843 0.28 -0.4
513,654 + GFF1843 0.29 -0.0
513,654 + GFF1843 0.29 +1.3
514,178 + GFF1843 0.69 -0.2
514,179 - GFF1843 0.69 +0.2
514,299 - GFF1843 0.79 -0.0
514,299 - GFF1843 0.79 +0.0
514,420 + GFF1843 0.88 -0.4
514,420 + GFF1843 0.88 +0.5
514,420 + GFF1843 0.88 -0.4
514,420 + GFF1843 0.88 +1.8
514,420 + GFF1843 0.88 +1.1
514,420 + GFF1843 0.88 -0.4
514,421 - GFF1843 0.88 -0.7
514,421 - GFF1843 0.88 +0.2
514,421 - GFF1843 0.88 -0.6
514,425 - GFF1843 0.89 +0.3
514,425 - GFF1843 0.89 +2.8
514,425 - GFF1843 0.89 -1.0
514,463 + -0.7
514,463 + -0.5
514,463 + +0.4
514,463 + -1.8
514,463 + -0.5
514,464 - -0.4
514,464 - +0.3
514,464 - -0.6
514,553 + +0.2
514,553 + -0.6
514,553 + -0.1
514,553 + -2.1
514,554 - -0.0
514,554 - -0.5
514,554 - +0.3
514,554 - -1.0
514,554 - -0.0
514,626 - +0.2
514,626 - +0.3
514,631 + +1.5
514,631 + -1.0
514,631 + +0.3
514,632 - -0.9
514,634 - +0.9
514,634 - +2.2
514,634 - -1.6
514,634 - -0.2
514,782 + +0.5
514,783 - +0.6
514,838 + GFF1844 0.10 +0.0
514,838 + GFF1844 0.10 -0.3
514,838 + GFF1844 0.10 -0.1
514,838 + GFF1844 0.10 +0.5
514,838 + GFF1844 0.10 -0.2
514,838 + GFF1844 0.10 -0.5
514,838 + GFF1844 0.10 -1.0
514,839 - GFF1844 0.10 -0.8
514,839 - GFF1844 0.10 +0.3
515,057 + GFF1844 0.25 -0.5
515,057 + GFF1844 0.25 +0.2
515,258 + GFF1844 0.38 +0.2
515,258 + GFF1844 0.38 +0.9
515,258 + GFF1844 0.38 -0.1
515,258 + GFF1844 0.38 -0.6
515,259 - GFF1844 0.38 +0.1
515,259 - GFF1844 0.38 +0.6
515,259 - GFF1844 0.38 -0.2
515,259 - GFF1844 0.38 -0.1
515,259 - GFF1844 0.38 -0.0
515,259 - GFF1844 0.38 +0.1

Or see this region's nucleotide sequence