Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1816 and GFF1817 are separated by 74 nucleotides GFF1817 and GFF1818 are separated by 4 nucleotides GFF1818 and GFF1819 are separated by 56 nucleotides
GFF1816 - Transcriptional regulator, GntR family, at 480,777 to 481,451
GFF1816
GFF1817 - 5-hydroxyisourate hydrolase (EC 3.5.2.17), at 481,526 to 481,876
GFF1817
GFF1818 - FIG00932412: hypothetical protein, at 481,881 to 482,378
GFF1818
GFF1819 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 482,435 to 483,244
GFF1819
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 480.958 kb on + strand, within GFF1816 at 480.959 kb on - strand, within GFF1816 at 480.959 kb on - strand, within GFF1816 at 481.454 kb on + strand at 481.454 kb on + strand at 481.454 kb on + strand at 481.454 kb on + strand at 481.454 kb on + strand at 481.454 kb on + strand at 481.454 kb on + strand at 481.476 kb on - strand at 481.545 kb on + strand at 481.546 kb on - strand at 481.595 kb on + strand, within GFF1817 at 481.595 kb on + strand, within GFF1817 at 481.596 kb on - strand, within GFF1817 at 481.596 kb on - strand, within GFF1817 at 481.673 kb on + strand, within GFF1817 at 481.673 kb on + strand, within GFF1817 at 481.703 kb on + strand, within GFF1817 at 481.704 kb on - strand, within GFF1817 at 481.730 kb on + strand, within GFF1817 at 481.730 kb on + strand, within GFF1817 at 481.820 kb on + strand, within GFF1817 at 481.820 kb on + strand, within GFF1817 at 481.820 kb on + strand, within GFF1817 at 481.820 kb on + strand, within GFF1817 at 481.820 kb on + strand, within GFF1817 at 481.820 kb on + strand, within GFF1817 at 481.820 kb on + strand, within GFF1817 at 481.821 kb on - strand, within GFF1817 at 481.821 kb on - strand, within GFF1817 at 481.821 kb on - strand, within GFF1817 at 481.821 kb on - strand, within GFF1817 at 481.821 kb on - strand, within GFF1817 at 481.853 kb on + strand at 481.853 kb on + strand at 481.853 kb on + strand at 481.853 kb on + strand at 481.853 kb on + strand at 481.854 kb on - strand at 481.854 kb on - strand at 481.854 kb on - strand at 481.854 kb on - strand at 481.862 kb on + strand at 481.863 kb on - strand at 482.152 kb on + strand, within GFF1818 at 482.152 kb on + strand, within GFF1818 at 482.152 kb on + strand, within GFF1818 at 482.152 kb on + strand, within GFF1818 at 482.152 kb on + strand, within GFF1818 at 482.152 kb on + strand, within GFF1818 at 482.152 kb on + strand, within GFF1818 at 482.153 kb on - strand, within GFF1818 at 482.153 kb on - strand, within GFF1818 at 482.153 kb on - strand, within GFF1818 at 482.153 kb on - strand, within GFF1818 at 482.153 kb on - strand, within GFF1818 at 482.153 kb on - strand, within GFF1818 at 482.176 kb on + strand, within GFF1818 at 482.176 kb on + strand, within GFF1818 at 482.177 kb on - strand, within GFF1818 at 482.177 kb on - strand, within GFF1818 at 482.177 kb on - strand, within GFF1818 at 482.177 kb on - strand, within GFF1818 at 482.177 kb on - strand, within GFF1818 at 482.177 kb on - strand, within GFF1818 at 482.363 kb on + strand at 482.363 kb on + strand at 482.364 kb on - strand at 482.388 kb on + strand at 482.388 kb on + strand at 482.424 kb on + strand at 482.720 kb on + strand, within GFF1819 at 483.059 kb on + strand, within GFF1819 at 483.059 kb on + strand, within GFF1819 at 483.059 kb on + strand, within GFF1819 at 483.059 kb on + strand, within GFF1819 at 483.060 kb on - strand, within GFF1819 at 483.060 kb on - strand, within GFF1819 at 483.060 kb on - strand, within GFF1819 at 483.060 kb on - strand, within GFF1819 at 483.060 kb on - strand, within GFF1819 at 483.060 kb on - strand, within GFF1819 at 483.060 kb on - strand, within GFF1819
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 480,958 + GFF1816 0.27 +2.7 480,959 - GFF1816 0.27 +1.2 480,959 - GFF1816 0.27 -0.1 481,454 + -0.3 481,454 + +0.4 481,454 + -1.7 481,454 + +0.4 481,454 + +0.9 481,454 + +0.2 481,454 + +1.1 481,476 - -0.1 481,545 + -0.3 481,546 - -0.6 481,595 + GFF1817 0.20 -1.3 481,595 + GFF1817 0.20 -0.0 481,596 - GFF1817 0.20 -0.1 481,596 - GFF1817 0.20 -0.8 481,673 + GFF1817 0.42 -0.6 481,673 + GFF1817 0.42 -0.1 481,703 + GFF1817 0.50 +0.0 481,704 - GFF1817 0.51 -1.1 481,730 + GFF1817 0.58 +0.1 481,730 + GFF1817 0.58 +0.0 481,820 + GFF1817 0.84 -0.2 481,820 + GFF1817 0.84 +0.4 481,820 + GFF1817 0.84 -0.1 481,820 + GFF1817 0.84 +0.9 481,820 + GFF1817 0.84 -0.1 481,820 + GFF1817 0.84 +0.4 481,820 + GFF1817 0.84 -0.6 481,821 - GFF1817 0.84 +0.0 481,821 - GFF1817 0.84 -1.6 481,821 - GFF1817 0.84 +0.9 481,821 - GFF1817 0.84 +0.6 481,821 - GFF1817 0.84 +0.1 481,853 + +0.1 481,853 + +0.3 481,853 + -0.2 481,853 + -0.1 481,853 + -0.3 481,854 - +0.2 481,854 - +0.3 481,854 - +0.5 481,854 - -0.3 481,862 + -0.3 481,863 - -1.6 482,152 + GFF1818 0.54 +0.1 482,152 + GFF1818 0.54 +0.3 482,152 + GFF1818 0.54 -0.8 482,152 + GFF1818 0.54 -0.1 482,152 + GFF1818 0.54 +0.3 482,152 + GFF1818 0.54 +0.8 482,152 + GFF1818 0.54 -0.3 482,153 - GFF1818 0.55 +1.2 482,153 - GFF1818 0.55 -0.5 482,153 - GFF1818 0.55 -0.5 482,153 - GFF1818 0.55 -0.6 482,153 - GFF1818 0.55 -0.3 482,153 - GFF1818 0.55 -1.4 482,176 + GFF1818 0.59 -0.6 482,176 + GFF1818 0.59 -1.6 482,177 - GFF1818 0.59 -0.4 482,177 - GFF1818 0.59 +0.4 482,177 - GFF1818 0.59 -0.2 482,177 - GFF1818 0.59 -0.8 482,177 - GFF1818 0.59 -0.8 482,177 - GFF1818 0.59 +0.5 482,363 + +1.1 482,363 + -0.3 482,364 - -0.0 482,388 + +0.8 482,388 + -0.4 482,424 + -1.0 482,720 + GFF1819 0.35 +2.0 483,059 + GFF1819 0.77 -0.2 483,059 + GFF1819 0.77 -1.2 483,059 + GFF1819 0.77 -1.8 483,059 + GFF1819 0.77 +0.3 483,060 - GFF1819 0.77 +0.3 483,060 - GFF1819 0.77 -1.2 483,060 - GFF1819 0.77 +0.5 483,060 - GFF1819 0.77 +0.2 483,060 - GFF1819 0.77 -1.0 483,060 - GFF1819 0.77 +3.3 483,060 - GFF1819 0.77 -0.4
Or see this region's nucleotide sequence