Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1788 and GFF1789 are separated by 50 nucleotides GFF1789 and GFF1790 are separated by 13 nucleotides GFF1790 and GFF1791 overlap by 1 nucleotides
GFF1788 - hypothetical protein, at 449,215 to 449,436
GFF1788
GFF1789 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 449,487 to 450,257
GFF1789
GFF1790 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 450,271 to 451,143
GFF1790
GFF1791 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 451,143 to 452,177
GFF1791
Position (kb) 449
450
451 Strain fitness (log2 ratio) -2
-1
0
1 at 448.612 kb on + strand at 448.612 kb on + strand at 448.612 kb on + strand at 448.613 kb on - strand at 448.844 kb on - strand at 448.942 kb on + strand at 448.946 kb on - strand at 448.946 kb on - strand at 449.405 kb on - strand, within GFF1788 at 449.488 kb on + strand at 449.489 kb on - strand at 449.555 kb on - strand at 449.580 kb on + strand, within GFF1789 at 449.580 kb on + strand, within GFF1789 at 449.642 kb on - strand, within GFF1789 at 449.642 kb on - strand, within GFF1789 at 449.731 kb on + strand, within GFF1789 at 449.989 kb on + strand, within GFF1789 at 449.989 kb on + strand, within GFF1789 at 450.377 kb on + strand, within GFF1790 at 450.377 kb on + strand, within GFF1790 at 450.377 kb on + strand, within GFF1790 at 450.458 kb on + strand, within GFF1790 at 450.458 kb on + strand, within GFF1790 at 450.458 kb on + strand, within GFF1790 at 450.459 kb on - strand, within GFF1790 at 450.459 kb on - strand, within GFF1790 at 450.744 kb on - strand, within GFF1790 at 451.064 kb on + strand at 451.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 448,612 + -0.6 448,612 + -0.8 448,612 + -1.8 448,613 - -1.7 448,844 - -0.1 448,942 + -1.7 448,946 - -0.3 448,946 - +1.1 449,405 - GFF1788 0.86 -0.8 449,488 + -0.4 449,489 - -0.2 449,555 - -0.2 449,580 + GFF1789 0.12 +0.2 449,580 + GFF1789 0.12 -1.4 449,642 - GFF1789 0.20 -0.0 449,642 - GFF1789 0.20 -0.8 449,731 + GFF1789 0.32 -0.8 449,989 + GFF1789 0.65 -0.5 449,989 + GFF1789 0.65 -0.8 450,377 + GFF1790 0.12 -0.8 450,377 + GFF1790 0.12 +0.5 450,377 + GFF1790 0.12 -0.1 450,458 + GFF1790 0.21 -0.1 450,458 + GFF1790 0.21 -0.2 450,458 + GFF1790 0.21 -0.1 450,459 - GFF1790 0.22 +0.0 450,459 - GFF1790 0.22 -0.3 450,744 - GFF1790 0.54 -0.2 451,064 + -1.6 451,201 - -1.3
Or see this region's nucleotide sequence