Strain Fitness in Variovorax sp. SCN45 around GFF178

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF176 and GFF177 overlap by 4 nucleotidesGFF177 and GFF178 are separated by 39 nucleotidesGFF178 and GFF179 are separated by 14 nucleotides GFF176 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 206,960 to 207,619 GFF176 GFF177 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 207,616 to 208,386 GFF177 GFF178 - Mannonate dehydratase (EC 4.2.1.8), at 208,426 to 209,637 GFF178 GFF179 - D-mannonate oxidoreductase (EC 1.1.1.57), at 209,652 to 211,154 GFF179 Position (kb) 208 209 210Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 207.548 kb on + strand, within GFF176at 207.548 kb on + strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.549 kb on - strand, within GFF176at 207.591 kb on + strandat 207.591 kb on + strandat 207.591 kb on + strandat 207.664 kb on + strandat 207.664 kb on + strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.665 kb on - strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.685 kb on + strandat 207.686 kb on - strandat 208.170 kb on - strand, within GFF177at 208.170 kb on - strand, within GFF177at 208.418 kb on + strandat 208.418 kb on + strandat 208.418 kb on + strandat 208.418 kb on + strandat 208.419 kb on - strandat 208.562 kb on - strand, within GFF178at 208.630 kb on + strand, within GFF178at 208.630 kb on + strand, within GFF178at 208.630 kb on + strand, within GFF178at 208.631 kb on - strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.636 kb on + strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.637 kb on - strand, within GFF178at 208.649 kb on - strand, within GFF178at 208.649 kb on - strand, within GFF178at 208.741 kb on + strand, within GFF178at 208.741 kb on + strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.742 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.784 kb on - strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.837 kb on + strand, within GFF178at 208.838 kb on - strand, within GFF178at 208.852 kb on + strand, within GFF178at 208.853 kb on - strand, within GFF178at 208.853 kb on - strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.900 kb on + strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.901 kb on - strand, within GFF178at 208.927 kb on + strand, within GFF178at 208.927 kb on + strand, within GFF178at 208.928 kb on - strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.981 kb on + strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 208.982 kb on - strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.338 kb on + strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.339 kb on - strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.443 kb on + strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.444 kb on - strand, within GFF178at 209.489 kb on - strand, within GFF178at 209.569 kb on + strandat 209.569 kb on + strandat 209.569 kb on + strandat 209.569 kb on + strandat 209.569 kb on + strandat 209.570 kb on - strandat 209.570 kb on - strandat 209.575 kb on + strandat 209.575 kb on + strandat 209.575 kb on + strandat 209.587 kb on + strandat 209.895 kb on + strand, within GFF179at 209.895 kb on + strand, within GFF179at 209.895 kb on + strand, within GFF179at 209.896 kb on - strand, within GFF179at 210.066 kb on + strand, within GFF179at 210.582 kb on + strand, within GFF179at 210.583 kb on - strand, within GFF179

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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207,548 + GFF176 0.89 -0.1
207,548 + GFF176 0.89 +0.6
207,549 - GFF176 0.89 -0.2
207,549 - GFF176 0.89 -0.1
207,591 + -0.8
207,591 + -0.0
207,591 + -0.9
207,664 + +0.7
207,664 + -0.3
207,665 - -0.6
207,665 - -0.3
207,665 - -0.6
207,665 - -0.3
207,685 + -0.0
207,685 + +0.3
207,685 + -0.7
207,685 + -0.2
207,686 - -0.0
208,170 - GFF177 0.72 -0.0
208,170 - GFF177 0.72 +0.1
208,418 + -0.7
208,418 + -0.1
208,418 + +0.3
208,418 + -0.4
208,419 - -1.5
208,562 - GFF178 0.11 -1.2
208,630 + GFF178 0.17 -1.3
208,630 + GFF178 0.17 -1.9
208,630 + GFF178 0.17 -0.4
208,631 - GFF178 0.17 -1.7
208,636 + GFF178 0.17 -0.5
208,636 + GFF178 0.17 -0.6
208,636 + GFF178 0.17 +0.9
208,636 + GFF178 0.17 -1.7
208,637 - GFF178 0.17 +0.1
208,637 - GFF178 0.17 +0.3
208,637 - GFF178 0.17 -0.7
208,637 - GFF178 0.17 -0.2
208,637 - GFF178 0.17 +0.6
208,637 - GFF178 0.17 +0.7
208,637 - GFF178 0.17 -0.7
208,649 - GFF178 0.18 -0.1
208,649 - GFF178 0.18 -0.1
208,741 + GFF178 0.26 +1.9
208,741 + GFF178 0.26 -1.4
208,742 - GFF178 0.26 -0.0
208,742 - GFF178 0.26 -0.5
208,742 - GFF178 0.26 +0.5
208,784 - GFF178 0.30 -0.6
208,784 - GFF178 0.30 +0.5
208,784 - GFF178 0.30 +0.1
208,837 + GFF178 0.34 -0.1
208,837 + GFF178 0.34 +0.3
208,837 + GFF178 0.34 +0.6
208,838 - GFF178 0.34 -0.6
208,852 + GFF178 0.35 -0.8
208,853 - GFF178 0.35 +0.1
208,853 - GFF178 0.35 -0.8
208,900 + GFF178 0.39 -0.4
208,900 + GFF178 0.39 -0.3
208,900 + GFF178 0.39 -2.2
208,900 + GFF178 0.39 +0.1
208,900 + GFF178 0.39 -1.0
208,901 - GFF178 0.39 +1.0
208,901 - GFF178 0.39 +0.1
208,901 - GFF178 0.39 -0.1
208,901 - GFF178 0.39 +0.3
208,901 - GFF178 0.39 +0.5
208,927 + GFF178 0.41 -0.3
208,927 + GFF178 0.41 +0.9
208,928 - GFF178 0.41 -1.3
208,981 + GFF178 0.46 +0.3
208,981 + GFF178 0.46 -0.7
208,981 + GFF178 0.46 -0.7
208,981 + GFF178 0.46 -0.3
208,981 + GFF178 0.46 +1.3
208,982 - GFF178 0.46 -1.8
208,982 - GFF178 0.46 -0.9
208,982 - GFF178 0.46 -0.2
208,982 - GFF178 0.46 -0.9
208,982 - GFF178 0.46 -1.9
208,982 - GFF178 0.46 +0.5
209,338 + GFF178 0.75 -0.6
209,338 + GFF178 0.75 -1.8
209,338 + GFF178 0.75 -0.4
209,339 - GFF178 0.75 +0.3
209,339 - GFF178 0.75 -0.0
209,339 - GFF178 0.75 -0.4
209,339 - GFF178 0.75 -1.1
209,443 + GFF178 0.84 +1.0
209,443 + GFF178 0.84 -1.1
209,443 + GFF178 0.84 -0.4
209,443 + GFF178 0.84 -0.4
209,443 + GFF178 0.84 -0.5
209,444 - GFF178 0.84 -0.1
209,444 - GFF178 0.84 -0.6
209,444 - GFF178 0.84 -0.6
209,444 - GFF178 0.84 +0.5
209,444 - GFF178 0.84 -0.3
209,444 - GFF178 0.84 -1.3
209,444 - GFF178 0.84 +0.5
209,489 - GFF178 0.88 -0.7
209,569 + -0.7
209,569 + -0.8
209,569 + +1.3
209,569 + +0.6
209,569 + +0.3
209,570 - -0.1
209,570 - -1.1
209,575 + -0.3
209,575 + -0.6
209,575 + -0.7
209,587 + -0.7
209,895 + GFF179 0.16 -0.2
209,895 + GFF179 0.16 +0.4
209,895 + GFF179 0.16 -0.4
209,896 - GFF179 0.16 -2.8
210,066 + GFF179 0.28 +0.2
210,582 + GFF179 0.62 -0.3
210,583 - GFF179 0.62 -0.2

Or see this region's nucleotide sequence