Strain Fitness in Variovorax sp. SCN45 around GFF1769

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1768 and GFF1769 are separated by 211 nucleotidesGFF1769 and GFF1770 are separated by 90 nucleotidesGFF1770 and GFF1771 overlap by 4 nucleotides GFF1768 - FIG00729359: hypothetical protein, at 429,709 to 431,220 GFF1768 GFF1769 - Urease accessory protein UreD, at 431,432 to 432,262 GFF1769 GFF1770 - cytidine/deoxycytidylate deaminase family protein, at 432,353 to 432,880 GFF1770 GFF1771 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 432,877 to 433,914 GFF1771 Position (kb) 431 432 433Strain fitness (log2 ratio) -1 0 1 2at 430.490 kb on + strand, within GFF1768at 430.491 kb on - strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.622 kb on + strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.623 kb on - strand, within GFF1768at 430.640 kb on + strand, within GFF1768at 430.649 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.739 kb on + strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.740 kb on - strand, within GFF1768at 430.964 kb on + strand, within GFF1768at 430.965 kb on - strand, within GFF1768at 430.988 kb on + strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.989 kb on - strand, within GFF1768at 430.991 kb on + strand, within GFF1768at 430.991 kb on + strand, within GFF1768at 430.991 kb on + strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 430.992 kb on - strand, within GFF1768at 431.006 kb on + strand, within GFF1768at 431.027 kb on + strand, within GFF1768at 431.028 kb on - strand, within GFF1768at 431.028 kb on - strand, within GFF1768at 431.028 kb on - strand, within GFF1768at 431.069 kb on + strandat 431.070 kb on - strandat 431.070 kb on - strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.084 kb on + strandat 431.085 kb on - strandat 431.085 kb on - strandat 431.235 kb on + strandat 431.297 kb on + strandat 431.374 kb on + strandat 431.374 kb on + strandat 431.375 kb on - strandat 431.680 kb on - strand, within GFF1769at 431.802 kb on + strand, within GFF1769at 431.803 kb on - strand, within GFF1769at 431.803 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 431.926 kb on - strand, within GFF1769at 432.175 kb on + strand, within GFF1769at 432.176 kb on - strand, within GFF1769at 432.231 kb on + strandat 432.232 kb on - strandat 432.232 kb on - strandat 432.232 kb on - strandat 432.273 kb on + strandat 432.273 kb on + strandat 432.273 kb on + strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.274 kb on - strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.276 kb on + strandat 432.277 kb on - strandat 432.277 kb on - strandat 432.277 kb on - strandat 432.354 kb on + strandat 432.355 kb on - strandat 432.355 kb on - strandat 432.355 kb on - strandat 432.591 kb on + strand, within GFF1770at 432.591 kb on + strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.592 kb on - strand, within GFF1770at 432.846 kb on + strandat 432.846 kb on + strandat 433.012 kb on + strand, within GFF1771at 433.012 kb on + strand, within GFF1771at 433.014 kb on + strand, within GFF1771at 433.015 kb on - strand, within GFF1771at 433.015 kb on - strand, within GFF1771at 433.055 kb on + strand, within GFF1771at 433.055 kb on + strand, within GFF1771at 433.055 kb on + strand, within GFF1771at 433.056 kb on - strand, within GFF1771

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
430,490 + GFF1768 0.52 +0.7
430,491 - GFF1768 0.52 -0.1
430,622 + GFF1768 0.60 +2.7
430,622 + GFF1768 0.60 -1.0
430,622 + GFF1768 0.60 -0.9
430,622 + GFF1768 0.60 +1.0
430,622 + GFF1768 0.60 -0.4
430,622 + GFF1768 0.60 -0.9
430,622 + GFF1768 0.60 -0.3
430,622 + GFF1768 0.60 +0.4
430,623 - GFF1768 0.60 -0.4
430,623 - GFF1768 0.60 +0.5
430,623 - GFF1768 0.60 -0.6
430,623 - GFF1768 0.60 -0.3
430,623 - GFF1768 0.60 +0.3
430,640 + GFF1768 0.62 -0.3
430,649 + GFF1768 0.62 -0.3
430,739 + GFF1768 0.68 -0.4
430,739 + GFF1768 0.68 +0.7
430,739 + GFF1768 0.68 +0.2
430,739 + GFF1768 0.68 -0.4
430,739 + GFF1768 0.68 -0.2
430,740 - GFF1768 0.68 +0.6
430,740 - GFF1768 0.68 +0.7
430,740 - GFF1768 0.68 +0.7
430,740 - GFF1768 0.68 -0.6
430,740 - GFF1768 0.68 +0.3
430,740 - GFF1768 0.68 -0.2
430,964 + GFF1768 0.83 -0.8
430,965 - GFF1768 0.83 -0.9
430,988 + GFF1768 0.85 -0.4
430,989 - GFF1768 0.85 -1.4
430,989 - GFF1768 0.85 +0.8
430,989 - GFF1768 0.85 +0.0
430,989 - GFF1768 0.85 +0.5
430,991 + GFF1768 0.85 -0.6
430,991 + GFF1768 0.85 -0.6
430,991 + GFF1768 0.85 +0.2
430,992 - GFF1768 0.85 -0.6
430,992 - GFF1768 0.85 +0.3
430,992 - GFF1768 0.85 -0.8
430,992 - GFF1768 0.85 -1.1
431,006 + GFF1768 0.86 -0.2
431,027 + GFF1768 0.87 -0.4
431,028 - GFF1768 0.87 -0.2
431,028 - GFF1768 0.87 -0.3
431,028 - GFF1768 0.87 -0.1
431,069 + -0.7
431,070 - +0.7
431,070 - -0.5
431,084 + -0.3
431,084 + +1.3
431,084 + -0.1
431,084 + +0.2
431,084 + +0.7
431,084 + -1.5
431,085 - -0.2
431,085 - -0.2
431,235 + +0.2
431,297 + +0.2
431,374 + -0.1
431,374 + -0.1
431,375 - +0.6
431,680 - GFF1769 0.30 -0.2
431,802 + GFF1769 0.45 -0.8
431,803 - GFF1769 0.45 -0.7
431,803 - GFF1769 0.45 -0.6
431,926 - GFF1769 0.59 -0.4
431,926 - GFF1769 0.59 -0.7
431,926 - GFF1769 0.59 +1.1
431,926 - GFF1769 0.59 -0.7
432,175 + GFF1769 0.89 -0.0
432,176 - GFF1769 0.90 -1.3
432,231 + +0.1
432,232 - -0.4
432,232 - +0.3
432,232 - -0.0
432,273 + -1.6
432,273 + +0.7
432,273 + +0.0
432,274 - -1.2
432,274 - -0.4
432,274 - +0.3
432,274 - -0.3
432,274 - -0.4
432,276 + +0.2
432,276 + +0.7
432,276 + -0.2
432,276 + -0.8
432,276 + -0.3
432,276 + +1.1
432,277 - -0.7
432,277 - +0.2
432,277 - +0.7
432,354 + -1.0
432,355 - -1.5
432,355 - -0.1
432,355 - +0.2
432,591 + GFF1770 0.45 -0.3
432,591 + GFF1770 0.45 -0.2
432,592 - GFF1770 0.45 -0.7
432,592 - GFF1770 0.45 +0.2
432,592 - GFF1770 0.45 +0.9
432,592 - GFF1770 0.45 -0.3
432,592 - GFF1770 0.45 -0.1
432,846 + -0.4
432,846 + -0.6
433,012 + GFF1771 0.13 -0.2
433,012 + GFF1771 0.13 +0.6
433,014 + GFF1771 0.13 +0.1
433,015 - GFF1771 0.13 +0.7
433,015 - GFF1771 0.13 +0.6
433,055 + GFF1771 0.17 -0.4
433,055 + GFF1771 0.17 -0.7
433,055 + GFF1771 0.17 +0.4
433,056 - GFF1771 0.17 -0.4

Or see this region's nucleotide sequence