Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1762 and GFF1763 overlap by 1 nucleotides GFF1763 and GFF1764 overlap by 7 nucleotides GFF1764 and GFF1765 are separated by 88 nucleotides
GFF1762 - no description, at 424,030 to 425,124
GFF1762
GFF1763 - HemK family modification methylase PA2179, at 425,124 to 426,077
GFF1763
GFF1764 - hypothetical protein, at 426,071 to 426,967
GFF1764
GFF1765 - putative membrane protein, at 427,056 to 428,234
GFF1765
Position (kb) 426
427 Strain fitness (log2 ratio) -1
0
1
2 at 425.126 kb on - strand at 425.191 kb on + strand at 425.192 kb on - strand at 425.192 kb on - strand at 425.242 kb on + strand, within GFF1763 at 425.242 kb on + strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.452 kb on + strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.561 kb on - strand, within GFF1763 at 425.791 kb on + strand, within GFF1763 at 426.268 kb on - strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 427.044 kb on + strand at 427.045 kb on - strand at 427.045 kb on - strand at 427.888 kb on + strand, within GFF1765 at 427.888 kb on + strand, within GFF1765
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 425,126 - +0.7 425,191 + +0.6 425,192 - -0.8 425,192 - +0.4 425,242 + GFF1763 0.12 -0.3 425,242 + GFF1763 0.12 -0.9 425,243 - GFF1763 0.12 -1.1 425,243 - GFF1763 0.12 -0.0 425,329 + GFF1763 0.21 -0.7 425,329 + GFF1763 0.21 -1.1 425,329 + GFF1763 0.21 -1.3 425,329 + GFF1763 0.21 -0.8 425,329 + GFF1763 0.21 +0.2 425,330 - GFF1763 0.22 +0.2 425,330 - GFF1763 0.22 +0.5 425,452 + GFF1763 0.34 -1.1 425,453 - GFF1763 0.34 +0.2 425,453 - GFF1763 0.34 -0.0 425,561 - GFF1763 0.46 -0.3 425,791 + GFF1763 0.70 -0.5 426,268 - GFF1764 0.22 -0.8 426,375 + GFF1764 0.34 -1.2 426,375 + GFF1764 0.34 -0.3 426,382 - GFF1764 0.35 +1.3 426,382 - GFF1764 0.35 +1.5 427,044 + -0.2 427,045 - +2.1 427,045 - +0.3 427,888 + GFF1765 0.71 -0.6 427,888 + GFF1765 0.71 +0.6
Or see this region's nucleotide sequence