Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1760 and GFF1761 overlap by 4 nucleotides GFF1761 and GFF1762 are separated by 8 nucleotides GFF1762 and GFF1763 overlap by 1 nucleotides GFF1763 and GFF1764 overlap by 7 nucleotides
GFF1760 - Probable transmembrane protein, at 421,962 to 423,167
GFF1760
GFF1761 - Putative hemolysin, at 423,164 to 424,021
GFF1761
GFF1762 - no description, at 424,030 to 425,124
GFF1762
GFF1763 - HemK family modification methylase PA2179, at 425,124 to 426,077
GFF1763
GFF1764 - hypothetical protein, at 426,071 to 426,967
GFF1764
Position (kb) 424
425
426 Strain fitness (log2 ratio) -1
0
1
2
3 at 423.256 kb on + strand, within GFF1761 at 423.256 kb on + strand, within GFF1761 at 423.312 kb on + strand, within GFF1761 at 423.312 kb on + strand, within GFF1761 at 423.312 kb on + strand, within GFF1761 at 423.313 kb on - strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.537 kb on + strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.538 kb on - strand, within GFF1761 at 423.673 kb on - strand, within GFF1761 at 423.717 kb on + strand, within GFF1761 at 423.717 kb on + strand, within GFF1761 at 423.718 kb on - strand, within GFF1761 at 423.718 kb on - strand, within GFF1761 at 423.718 kb on - strand, within GFF1761 at 424.577 kb on + strand, within GFF1762 at 424.577 kb on + strand, within GFF1762 at 424.578 kb on - strand, within GFF1762 at 424.578 kb on - strand, within GFF1762 at 424.631 kb on + strand, within GFF1762 at 424.631 kb on + strand, within GFF1762 at 424.664 kb on + strand, within GFF1762 at 424.665 kb on - strand, within GFF1762 at 424.709 kb on + strand, within GFF1762 at 424.709 kb on + strand, within GFF1762 at 424.709 kb on + strand, within GFF1762 at 424.710 kb on - strand, within GFF1762 at 424.910 kb on + strand, within GFF1762 at 425.126 kb on - strand at 425.191 kb on + strand at 425.192 kb on - strand at 425.192 kb on - strand at 425.242 kb on + strand, within GFF1763 at 425.242 kb on + strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.243 kb on - strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.329 kb on + strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.330 kb on - strand, within GFF1763 at 425.452 kb on + strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.453 kb on - strand, within GFF1763 at 425.561 kb on - strand, within GFF1763 at 425.791 kb on + strand, within GFF1763
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 423,256 + GFF1761 0.11 -0.5 423,256 + GFF1761 0.11 -0.1 423,312 + GFF1761 0.17 -0.2 423,312 + GFF1761 0.17 +0.2 423,312 + GFF1761 0.17 +0.5 423,313 - GFF1761 0.17 +3.3 423,537 + GFF1761 0.43 +0.8 423,537 + GFF1761 0.43 +0.3 423,537 + GFF1761 0.43 -1.1 423,537 + GFF1761 0.43 -0.1 423,537 + GFF1761 0.43 +0.1 423,537 + GFF1761 0.43 -0.3 423,537 + GFF1761 0.43 +1.1 423,537 + GFF1761 0.43 -0.1 423,537 + GFF1761 0.43 -0.3 423,537 + GFF1761 0.43 -0.1 423,537 + GFF1761 0.43 -0.3 423,537 + GFF1761 0.43 -0.6 423,538 - GFF1761 0.44 -0.8 423,538 - GFF1761 0.44 -0.9 423,538 - GFF1761 0.44 -0.4 423,538 - GFF1761 0.44 +0.5 423,538 - GFF1761 0.44 +0.0 423,538 - GFF1761 0.44 -0.6 423,538 - GFF1761 0.44 -0.3 423,538 - GFF1761 0.44 -0.3 423,538 - GFF1761 0.44 +0.1 423,538 - GFF1761 0.44 +0.4 423,673 - GFF1761 0.59 +1.7 423,717 + GFF1761 0.64 -0.0 423,717 + GFF1761 0.64 +0.4 423,718 - GFF1761 0.65 -0.1 423,718 - GFF1761 0.65 -0.9 423,718 - GFF1761 0.65 -1.0 424,577 + GFF1762 0.50 +1.2 424,577 + GFF1762 0.50 +0.9 424,578 - GFF1762 0.50 +0.1 424,578 - GFF1762 0.50 -0.4 424,631 + GFF1762 0.55 -0.8 424,631 + GFF1762 0.55 +0.6 424,664 + GFF1762 0.58 +0.2 424,665 - GFF1762 0.58 +0.2 424,709 + GFF1762 0.62 +0.1 424,709 + GFF1762 0.62 +1.2 424,709 + GFF1762 0.62 -0.2 424,710 - GFF1762 0.62 +1.4 424,910 + GFF1762 0.80 -1.4 425,126 - +0.7 425,191 + +0.6 425,192 - -0.8 425,192 - +0.4 425,242 + GFF1763 0.12 -0.3 425,242 + GFF1763 0.12 -0.9 425,243 - GFF1763 0.12 -1.1 425,243 - GFF1763 0.12 -0.0 425,329 + GFF1763 0.21 -0.7 425,329 + GFF1763 0.21 -1.1 425,329 + GFF1763 0.21 -1.3 425,329 + GFF1763 0.21 -0.8 425,329 + GFF1763 0.21 +0.2 425,330 - GFF1763 0.22 +0.2 425,330 - GFF1763 0.22 +0.5 425,452 + GFF1763 0.34 -1.1 425,453 - GFF1763 0.34 +0.2 425,453 - GFF1763 0.34 -0.0 425,561 - GFF1763 0.46 -0.3 425,791 + GFF1763 0.70 -0.5
Or see this region's nucleotide sequence