Strain Fitness in Variovorax sp. SCN45 around GFF1751

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1750 and GFF1751 are separated by 62 nucleotidesGFF1751 and GFF1752 are separated by 88 nucleotidesGFF1752 and GFF1753 are separated by 106 nucleotides GFF1750 - BUG/TctC family periplasmic protein, at 410,715 to 411,725 GFF1750 GFF1751 - Rhodanese-related sulfurtransferase, 4 domains, at 411,788 to 413,371 GFF1751 GFF1752 - Cysteine dioxygenase (EC 1.13.11.20), at 413,460 to 414,050 GFF1752 GFF1753 - LysR family transcriptional regulator lrhA, at 414,157 to 415,050 GFF1753 Position (kb) 411 412 413 414Strain fitness (log2 ratio) -2 -1 0 1at 410.887 kb on + strand, within GFF1750at 410.887 kb on + strand, within GFF1750at 410.888 kb on - strand, within GFF1750at 411.136 kb on + strand, within GFF1750at 411.136 kb on + strand, within GFF1750at 411.137 kb on - strand, within GFF1750at 411.137 kb on - strand, within GFF1750at 411.137 kb on - strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.427 kb on + strand, within GFF1750at 411.428 kb on - strand, within GFF1750at 411.742 kb on + strandat 411.742 kb on + strandat 411.743 kb on - strandat 411.879 kb on + strandat 411.880 kb on - strandat 411.933 kb on + strandat 411.933 kb on + strandat 411.933 kb on + strandat 411.933 kb on + strandat 411.933 kb on + strandat 411.933 kb on + strandat 412.437 kb on + strand, within GFF1751at 412.437 kb on + strand, within GFF1751at 412.734 kb on + strand, within GFF1751at 413.001 kb on + strand, within GFF1751at 413.179 kb on - strand, within GFF1751at 413.259 kb on + strandat 413.260 kb on - strandat 413.260 kb on - strandat 413.260 kb on - strandat 413.497 kb on + strandat 413.497 kb on + strandat 413.498 kb on - strandat 413.557 kb on + strand, within GFF1752at 413.557 kb on + strand, within GFF1752at 413.557 kb on + strand, within GFF1752at 413.557 kb on + strand, within GFF1752at 413.558 kb on - strand, within GFF1752at 413.558 kb on - strand, within GFF1752at 413.558 kb on - strand, within GFF1752at 413.713 kb on + strand, within GFF1752at 413.713 kb on + strand, within GFF1752at 413.785 kb on + strand, within GFF1752at 413.812 kb on + strand, within GFF1752at 413.813 kb on - strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.821 kb on + strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.822 kb on - strand, within GFF1752at 413.852 kb on - strand, within GFF1752at 413.905 kb on + strand, within GFF1752at 413.905 kb on + strand, within GFF1752at 414.094 kb on + strandat 414.095 kb on - strandat 414.162 kb on + strandat 414.163 kb on - strandat 414.364 kb on + strand, within GFF1753

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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410,887 + GFF1750 0.17 -0.5
410,887 + GFF1750 0.17 -0.6
410,888 - GFF1750 0.17 +0.4
411,136 + GFF1750 0.42 -0.9
411,136 + GFF1750 0.42 -0.5
411,137 - GFF1750 0.42 +0.2
411,137 - GFF1750 0.42 +0.1
411,137 - GFF1750 0.42 -0.0
411,223 + GFF1750 0.50 -1.7
411,223 + GFF1750 0.50 -0.3
411,223 + GFF1750 0.50 +0.6
411,223 + GFF1750 0.50 +0.0
411,223 + GFF1750 0.50 -1.1
411,223 + GFF1750 0.50 -0.1
411,223 + GFF1750 0.50 -0.4
411,223 + GFF1750 0.50 -0.0
411,223 + GFF1750 0.50 -0.2
411,223 + GFF1750 0.50 -0.2
411,224 - GFF1750 0.50 +0.3
411,224 - GFF1750 0.50 +0.2
411,224 - GFF1750 0.50 +1.2
411,224 - GFF1750 0.50 -0.0
411,224 - GFF1750 0.50 -0.2
411,224 - GFF1750 0.50 -0.1
411,224 - GFF1750 0.50 -0.6
411,224 - GFF1750 0.50 -0.4
411,224 - GFF1750 0.50 -0.0
411,427 + GFF1750 0.70 -0.6
411,428 - GFF1750 0.71 -0.1
411,742 + -0.8
411,742 + -0.5
411,743 - +0.7
411,879 + -1.3
411,880 - +0.6
411,933 + +0.2
411,933 + -1.1
411,933 + -0.1
411,933 + -0.7
411,933 + +1.2
411,933 + +0.7
412,437 + GFF1751 0.41 +0.2
412,437 + GFF1751 0.41 -0.6
412,734 + GFF1751 0.60 -1.4
413,001 + GFF1751 0.77 +0.4
413,179 - GFF1751 0.88 -2.3
413,259 + -0.1
413,260 - +0.4
413,260 - -0.1
413,260 - -0.3
413,497 + +0.2
413,497 + +0.1
413,498 - +0.2
413,557 + GFF1752 0.16 -0.7
413,557 + GFF1752 0.16 -1.0
413,557 + GFF1752 0.16 -1.0
413,557 + GFF1752 0.16 -0.4
413,558 - GFF1752 0.17 -0.1
413,558 - GFF1752 0.17 -0.7
413,558 - GFF1752 0.17 +0.7
413,713 + GFF1752 0.43 -0.3
413,713 + GFF1752 0.43 +0.2
413,785 + GFF1752 0.55 -0.7
413,812 + GFF1752 0.60 -1.7
413,813 - GFF1752 0.60 -0.2
413,821 + GFF1752 0.61 -0.7
413,821 + GFF1752 0.61 +0.2
413,821 + GFF1752 0.61 -1.0
413,821 + GFF1752 0.61 -1.8
413,821 + GFF1752 0.61 -0.3
413,822 - GFF1752 0.61 +1.6
413,822 - GFF1752 0.61 -0.8
413,822 - GFF1752 0.61 +1.3
413,822 - GFF1752 0.61 -1.0
413,822 - GFF1752 0.61 -0.4
413,822 - GFF1752 0.61 -0.4
413,822 - GFF1752 0.61 -0.1
413,852 - GFF1752 0.66 +0.2
413,905 + GFF1752 0.75 -1.1
413,905 + GFF1752 0.75 +0.8
414,094 + +0.6
414,095 - -0.7
414,162 + -0.8
414,163 - +0.2
414,364 + GFF1753 0.23 +0.0

Or see this region's nucleotide sequence