Strain Fitness in Variovorax sp. SCN45 around GFF1749

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1747 and GFF1748 are separated by 90 nucleotidesGFF1748 and GFF1749 are separated by 21 nucleotidesGFF1749 and GFF1750 are separated by 44 nucleotides GFF1747 - FIG00799528: hypothetical protein, at 407,662 to 408,759 GFF1747 GFF1748 - Outer membrane lipoprotein, at 408,850 to 409,434 GFF1748 GFF1749 - Cystathionine beta-lyase (EC 4.4.1.8), at 409,456 to 410,670 GFF1749 GFF1750 - BUG/TctC family periplasmic protein, at 410,715 to 411,725 GFF1750 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.482 kb on - strand, within GFF1747at 408.482 kb on - strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.527 kb on - strand, within GFF1747at 408.527 kb on - strand, within GFF1747at 408.653 kb on - strandat 408.806 kb on - strandat 409.003 kb on + strand, within GFF1748at 409.003 kb on + strand, within GFF1748at 409.003 kb on + strand, within GFF1748at 409.063 kb on + strand, within GFF1748at 409.222 kb on + strand, within GFF1748at 409.222 kb on + strand, within GFF1748at 409.222 kb on + strand, within GFF1748at 409.223 kb on - strand, within GFF1748at 409.223 kb on - strand, within GFF1748at 409.223 kb on - strand, within GFF1748at 409.249 kb on + strand, within GFF1748at 409.249 kb on + strand, within GFF1748at 409.249 kb on + strand, within GFF1748at 409.250 kb on - strand, within GFF1748at 409.250 kb on - strand, within GFF1748at 409.286 kb on - strand, within GFF1748at 409.286 kb on - strand, within GFF1748at 409.330 kb on + strand, within GFF1748at 409.330 kb on + strand, within GFF1748at 409.331 kb on - strand, within GFF1748at 409.432 kb on + strandat 409.433 kb on - strandat 409.622 kb on + strand, within GFF1749at 410.018 kb on + strand, within GFF1749at 410.019 kb on - strand, within GFF1749at 410.162 kb on + strand, within GFF1749at 410.163 kb on - strand, within GFF1749at 410.163 kb on - strand, within GFF1749at 410.189 kb on + strand, within GFF1749at 410.190 kb on - strand, within GFF1749at 410.190 kb on - strand, within GFF1749at 410.309 kb on + strand, within GFF1749at 410.310 kb on - strand, within GFF1749at 410.310 kb on - strand, within GFF1749at 410.474 kb on + strand, within GFF1749at 410.706 kb on + strandat 410.707 kb on - strandat 410.707 kb on - strandat 410.887 kb on + strand, within GFF1750at 410.887 kb on + strand, within GFF1750at 410.888 kb on - strand, within GFF1750at 411.136 kb on + strand, within GFF1750at 411.136 kb on + strand, within GFF1750at 411.137 kb on - strand, within GFF1750at 411.137 kb on - strand, within GFF1750at 411.137 kb on - strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.223 kb on + strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.224 kb on - strand, within GFF1750at 411.427 kb on + strand, within GFF1750at 411.428 kb on - strand, within GFF1750

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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408,481 + GFF1747 0.75 +0.3
408,481 + GFF1747 0.75 -0.1
408,481 + GFF1747 0.75 -0.8
408,481 + GFF1747 0.75 -0.2
408,482 - GFF1747 0.75 -1.3
408,482 - GFF1747 0.75 -1.2
408,526 + GFF1747 0.79 -0.1
408,526 + GFF1747 0.79 -0.1
408,526 + GFF1747 0.79 +1.3
408,527 - GFF1747 0.79 +0.1
408,527 - GFF1747 0.79 -1.0
408,653 - -0.7
408,806 - -0.7
409,003 + GFF1748 0.26 -0.1
409,003 + GFF1748 0.26 -0.6
409,003 + GFF1748 0.26 -0.8
409,063 + GFF1748 0.36 -0.0
409,222 + GFF1748 0.64 -0.1
409,222 + GFF1748 0.64 -0.7
409,222 + GFF1748 0.64 -1.3
409,223 - GFF1748 0.64 -0.6
409,223 - GFF1748 0.64 -1.7
409,223 - GFF1748 0.64 -0.4
409,249 + GFF1748 0.68 -0.8
409,249 + GFF1748 0.68 -1.5
409,249 + GFF1748 0.68 -0.7
409,250 - GFF1748 0.68 -2.4
409,250 - GFF1748 0.68 +0.1
409,286 - GFF1748 0.75 +1.0
409,286 - GFF1748 0.75 -1.4
409,330 + GFF1748 0.82 -0.2
409,330 + GFF1748 0.82 -0.6
409,331 - GFF1748 0.82 -0.9
409,432 + +1.6
409,433 - -1.2
409,622 + GFF1749 0.14 -0.4
410,018 + GFF1749 0.46 +0.4
410,019 - GFF1749 0.46 -1.0
410,162 + GFF1749 0.58 -1.7
410,163 - GFF1749 0.58 -0.8
410,163 - GFF1749 0.58 -1.0
410,189 + GFF1749 0.60 -0.4
410,190 - GFF1749 0.60 -0.5
410,190 - GFF1749 0.60 -1.3
410,309 + GFF1749 0.70 +0.2
410,310 - GFF1749 0.70 -0.4
410,310 - GFF1749 0.70 -0.8
410,474 + GFF1749 0.84 -0.4
410,706 + -0.1
410,707 - -0.1
410,707 - +0.3
410,887 + GFF1750 0.17 -0.5
410,887 + GFF1750 0.17 -0.6
410,888 - GFF1750 0.17 +0.4
411,136 + GFF1750 0.42 -0.9
411,136 + GFF1750 0.42 -0.5
411,137 - GFF1750 0.42 +0.2
411,137 - GFF1750 0.42 +0.1
411,137 - GFF1750 0.42 -0.0
411,223 + GFF1750 0.50 -1.7
411,223 + GFF1750 0.50 -0.3
411,223 + GFF1750 0.50 +0.6
411,223 + GFF1750 0.50 +0.0
411,223 + GFF1750 0.50 -1.1
411,223 + GFF1750 0.50 -0.1
411,223 + GFF1750 0.50 -0.4
411,223 + GFF1750 0.50 -0.0
411,223 + GFF1750 0.50 -0.2
411,223 + GFF1750 0.50 -0.2
411,224 - GFF1750 0.50 +0.3
411,224 - GFF1750 0.50 +0.2
411,224 - GFF1750 0.50 +1.2
411,224 - GFF1750 0.50 -0.0
411,224 - GFF1750 0.50 -0.2
411,224 - GFF1750 0.50 -0.1
411,224 - GFF1750 0.50 -0.6
411,224 - GFF1750 0.50 -0.4
411,224 - GFF1750 0.50 -0.0
411,427 + GFF1750 0.70 -0.6
411,428 - GFF1750 0.71 -0.1

Or see this region's nucleotide sequence