Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1739 and GFF1740 are separated by 9 nucleotides GFF1740 and GFF1741 are separated by 76 nucleotides GFF1741 and GFF1742 are separated by 116 nucleotides GFF1742 and GFF1743 are separated by 46 nucleotides
GFF1739 - Glutamate carboxypeptidase (EC 3.4.17.11), at 398,629 to 399,906
GFF1739
GFF1740 - Transcriptional regulator, LysR family, at 399,916 to 400,827
GFF1740
GFF1741 - UPF0324 inner membrane protein YeiH, at 400,904 to 401,956
GFF1741
GFF1742 - hypothetical protein, at 402,073 to 402,492
GFF1742
GFF1743 - Transcriptional regulator, LysR family, at 402,539 to 403,558
GFF1743
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.476 kb on - strand, within GFF1740 at 400.500 kb on - strand, within GFF1740 at 400.514 kb on + strand, within GFF1740 at 400.515 kb on - strand, within GFF1740 at 400.891 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.908 kb on - strand at 400.908 kb on - strand at 400.908 kb on - strand at 401.268 kb on - strand, within GFF1741 at 401.268 kb on - strand, within GFF1741 at 401.447 kb on + strand, within GFF1741 at 401.448 kb on - strand, within GFF1741 at 401.465 kb on + strand, within GFF1741 at 401.465 kb on + strand, within GFF1741 at 401.465 kb on + strand, within GFF1741 at 402.347 kb on - strand, within GFF1742 at 402.560 kb on + strand at 402.560 kb on + strand at 402.614 kb on + strand at 402.614 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 400,476 - GFF1740 0.61 -0.4 400,500 - GFF1740 0.64 -0.5 400,514 + GFF1740 0.66 -2.4 400,515 - GFF1740 0.66 -0.2 400,891 + -0.6 400,907 + -0.3 400,907 + -0.1 400,907 + +0.3 400,907 + -0.8 400,907 + -0.8 400,907 + +0.6 400,908 - +1.1 400,908 - +0.9 400,908 - -0.6 401,268 - GFF1741 0.35 +0.4 401,268 - GFF1741 0.35 -0.2 401,447 + GFF1741 0.52 -0.1 401,448 - GFF1741 0.52 +0.0 401,465 + GFF1741 0.53 -0.8 401,465 + GFF1741 0.53 +2.1 401,465 + GFF1741 0.53 +1.3 402,347 - GFF1742 0.65 -0.7 402,560 + +0.4 402,560 + +1.0 402,614 + -0.5 402,614 + -0.8
Or see this region's nucleotide sequence