Strain Fitness in Variovorax sp. SCN45 around GFF1699

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1698 and GFF1699 are separated by 57 nucleotidesGFF1699 and GFF1700 are separated by 43 nucleotides GFF1698 - BUG/TctC family periplasmic protein, at 344,486 to 345,445 GFF1698 GFF1699 - hypothetical protein, at 345,503 to 346,144 GFF1699 GFF1700 - hypothetical protein, at 346,188 to 347,210 GFF1700 Position (kb) 345 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 344.553 kb on - strandat 344.553 kb on - strandat 344.553 kb on - strandat 344.709 kb on - strand, within GFF1698at 344.735 kb on + strand, within GFF1698at 344.736 kb on - strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.783 kb on + strand, within GFF1698at 344.784 kb on - strand, within GFF1698at 344.784 kb on - strand, within GFF1698at 344.906 kb on + strand, within GFF1698at 344.907 kb on - strand, within GFF1698at 345.107 kb on + strand, within GFF1698at 345.107 kb on + strand, within GFF1698at 345.108 kb on - strand, within GFF1698at 345.108 kb on - strand, within GFF1698at 345.227 kb on + strand, within GFF1698at 345.227 kb on + strand, within GFF1698at 345.227 kb on + strand, within GFF1698at 345.228 kb on - strand, within GFF1698at 345.344 kb on + strand, within GFF1698at 345.345 kb on - strand, within GFF1698at 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.480 kb on + strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.481 kb on - strandat 345.495 kb on - strandat 345.495 kb on - strandat 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.719 kb on + strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.720 kb on - strand, within GFF1699at 345.863 kb on + strand, within GFF1699at 345.864 kb on - strand, within GFF1699at 346.115 kb on + strandat 346.115 kb on + strandat 346.115 kb on + strandat 346.189 kb on + strandat 346.189 kb on + strandat 346.189 kb on + strandat 346.189 kb on + strandat 346.189 kb on + strandat 346.190 kb on - strandat 346.190 kb on - strandat 346.190 kb on - strandat 346.190 kb on - strandat 346.190 kb on - strandat 346.190 kb on - strandat 346.262 kb on + strandat 346.262 kb on + strandat 346.263 kb on - strandat 346.263 kb on - strandat 346.263 kb on - strandat 346.383 kb on + strand, within GFF1700at 346.523 kb on + strand, within GFF1700at 346.525 kb on + strand, within GFF1700at 346.525 kb on + strand, within GFF1700at 346.525 kb on + strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.765 kb on + strand, within GFF1700at 346.766 kb on - strand, within GFF1700at 346.766 kb on - strand, within GFF1700at 346.783 kb on + strand, within GFF1700at 346.783 kb on + strand, within GFF1700at 346.783 kb on + strand, within GFF1700at 346.784 kb on - strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.981 kb on + strand, within GFF1700at 346.982 kb on - strand, within GFF1700at 346.999 kb on + strand, within GFF1700at 346.999 kb on + strand, within GFF1700at 347.000 kb on - strand, within GFF1700at 347.083 kb on + strand, within GFF1700at 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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344,553 - +0.4
344,553 - +0.8
344,553 - +0.8
344,709 - GFF1698 0.23 +0.2
344,735 + GFF1698 0.26 +0.1
344,736 - GFF1698 0.26 -0.4
344,783 + GFF1698 0.31 -1.4
344,783 + GFF1698 0.31 +0.2
344,783 + GFF1698 0.31 +0.2
344,783 + GFF1698 0.31 -0.3
344,783 + GFF1698 0.31 +0.4
344,784 - GFF1698 0.31 -0.1
344,784 - GFF1698 0.31 -0.1
344,906 + GFF1698 0.44 +0.3
344,907 - GFF1698 0.44 -0.5
345,107 + GFF1698 0.65 -0.6
345,107 + GFF1698 0.65 -0.8
345,108 - GFF1698 0.65 +0.1
345,108 - GFF1698 0.65 +0.1
345,227 + GFF1698 0.77 -0.2
345,227 + GFF1698 0.77 -0.3
345,227 + GFF1698 0.77 -0.5
345,228 - GFF1698 0.77 -2.9
345,344 + GFF1698 0.89 -0.0
345,345 - GFF1698 0.89 +0.2
345,480 + -0.9
345,480 + -0.8
345,480 + +0.2
345,480 + -0.2
345,480 + +0.9
345,480 + -0.5
345,480 + -0.7
345,480 + +0.0
345,480 + +0.1
345,480 + +0.2
345,481 - -0.7
345,481 - -1.1
345,481 - -0.0
345,481 - +0.5
345,481 - -0.4
345,481 - -0.7
345,481 - +0.0
345,481 - +0.2
345,481 - -0.2
345,481 - -0.5
345,481 - -0.6
345,481 - +0.3
345,481 - +0.4
345,481 - +0.8
345,481 - -0.4
345,481 - -0.5
345,481 - -0.2
345,495 - -1.2
345,495 - -2.2
345,719 + GFF1699 0.34 +0.1
345,719 + GFF1699 0.34 +0.4
345,719 + GFF1699 0.34 +0.2
345,719 + GFF1699 0.34 -0.2
345,719 + GFF1699 0.34 +0.8
345,719 + GFF1699 0.34 -0.0
345,719 + GFF1699 0.34 +0.5
345,719 + GFF1699 0.34 +0.5
345,719 + GFF1699 0.34 +0.5
345,719 + GFF1699 0.34 +0.5
345,719 + GFF1699 0.34 +0.8
345,719 + GFF1699 0.34 -0.2
345,719 + GFF1699 0.34 -0.2
345,720 - GFF1699 0.34 -0.2
345,720 - GFF1699 0.34 -0.1
345,720 - GFF1699 0.34 -0.1
345,720 - GFF1699 0.34 -0.4
345,720 - GFF1699 0.34 -1.6
345,720 - GFF1699 0.34 +1.8
345,720 - GFF1699 0.34 -0.3
345,720 - GFF1699 0.34 +1.1
345,720 - GFF1699 0.34 -0.3
345,863 + GFF1699 0.56 +0.1
345,864 - GFF1699 0.56 -0.2
346,115 + -0.1
346,115 + +0.2
346,115 + +0.6
346,189 + -0.4
346,189 + -0.2
346,189 + +0.8
346,189 + -0.5
346,189 + -0.4
346,190 - +1.2
346,190 - -0.2
346,190 - +0.6
346,190 - +0.6
346,190 - -0.4
346,190 - +1.8
346,262 + +0.2
346,262 + -0.8
346,263 - -0.0
346,263 - -1.4
346,263 - +0.8
346,383 + GFF1700 0.19 -0.9
346,523 + GFF1700 0.33 -0.3
346,525 + GFF1700 0.33 -0.9
346,525 + GFF1700 0.33 -0.5
346,525 + GFF1700 0.33 -0.4
346,526 - GFF1700 0.33 -0.3
346,526 - GFF1700 0.33 -0.3
346,526 - GFF1700 0.33 -0.3
346,526 - GFF1700 0.33 +0.5
346,526 - GFF1700 0.33 +0.6
346,526 - GFF1700 0.33 -0.2
346,526 - GFF1700 0.33 -0.4
346,765 + GFF1700 0.56 +0.1
346,766 - GFF1700 0.57 -0.4
346,766 - GFF1700 0.57 -1.7
346,783 + GFF1700 0.58 -0.9
346,783 + GFF1700 0.58 -0.1
346,783 + GFF1700 0.58 -0.2
346,784 - GFF1700 0.58 -0.2
346,972 + GFF1700 0.77 -0.8
346,972 + GFF1700 0.77 -0.1
346,972 + GFF1700 0.77 -0.3
346,972 + GFF1700 0.77 +0.3
346,972 + GFF1700 0.77 +0.0
346,972 + GFF1700 0.77 -0.4
346,972 + GFF1700 0.77 +1.0
346,972 + GFF1700 0.77 -0.2
346,972 + GFF1700 0.77 +0.4
346,972 + GFF1700 0.77 -0.2
346,972 + GFF1700 0.77 -0.3
346,972 + GFF1700 0.77 +0.1
346,972 + GFF1700 0.77 +0.8
346,972 + GFF1700 0.77 -0.8
346,972 + GFF1700 0.77 -0.7
346,972 + GFF1700 0.77 -0.1
346,972 + GFF1700 0.77 +0.2
346,972 + GFF1700 0.77 +0.1
346,973 - GFF1700 0.77 +1.4
346,973 - GFF1700 0.77 +0.4
346,973 - GFF1700 0.77 +0.4
346,973 - GFF1700 0.77 -0.0
346,973 - GFF1700 0.77 +0.2
346,973 - GFF1700 0.77 -0.3
346,973 - GFF1700 0.77 -0.1
346,973 - GFF1700 0.77 -0.5
346,973 - GFF1700 0.77 +0.4
346,981 + GFF1700 0.78 -0.7
346,982 - GFF1700 0.78 +0.3
346,999 + GFF1700 0.79 +0.4
346,999 + GFF1700 0.79 -0.8
347,000 - GFF1700 0.79 -0.4
347,083 + GFF1700 0.87 +1.3
347,122 + +1.2
347,122 + -0.2
347,122 + -0.2
347,122 + +0.5
347,122 + +1.5
347,122 + +0.3
347,122 + -1.2
347,122 + -0.4
347,122 + -1.3
347,123 - -0.6
347,123 - -0.1
347,123 - -0.4
347,123 - -0.8
347,123 - +0.3
347,123 - +0.5
347,123 - -0.2

Or see this region's nucleotide sequence