Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1668 and GFF1669 are separated by 31 nucleotides GFF1669 and GFF1670 overlap by 11 nucleotides GFF1670 and GFF1671 overlap by 4 nucleotides
GFF1668 - BUG/TctC family periplasmic protein, at 313,732 to 314,700
GFF1668
GFF1669 - hypothetical protein, at 314,732 to 316,075
GFF1669
GFF1670 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 316,065 to 316,592
GFF1670
GFF1671 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 316,589 to 317,863
GFF1671
Position (kb) 314
315
316
317 Strain fitness (log2 ratio) -1
0
1 at 313.976 kb on + strand, within GFF1668 at 313.977 kb on - strand, within GFF1668 at 314.391 kb on - strand, within GFF1668 at 314.854 kb on - strand at 314.854 kb on - strand at 314.854 kb on - strand at 315.168 kb on + strand, within GFF1669 at 315.186 kb on + strand, within GFF1669 at 315.186 kb on + strand, within GFF1669 at 315.267 kb on + strand, within GFF1669 at 315.268 kb on - strand, within GFF1669 at 315.375 kb on + strand, within GFF1669 at 315.376 kb on - strand, within GFF1669 at 315.462 kb on + strand, within GFF1669 at 315.462 kb on + strand, within GFF1669 at 315.463 kb on - strand, within GFF1669 at 315.463 kb on - strand, within GFF1669 at 315.501 kb on + strand, within GFF1669 at 315.502 kb on - strand, within GFF1669 at 316.316 kb on - strand, within GFF1670 at 316.316 kb on - strand, within GFF1670 at 316.665 kb on + strand at 316.666 kb on - strand at 316.965 kb on + strand, within GFF1671 at 316.992 kb on + strand, within GFF1671
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 313,976 + GFF1668 0.25 -0.4 313,977 - GFF1668 0.25 -0.8 314,391 - GFF1668 0.68 -0.7 314,854 - -1.4 314,854 - +0.2 314,854 - -0.8 315,168 + GFF1669 0.32 +0.2 315,186 + GFF1669 0.34 -0.8 315,186 + GFF1669 0.34 -0.1 315,267 + GFF1669 0.40 -0.6 315,268 - GFF1669 0.40 +0.3 315,375 + GFF1669 0.48 +0.8 315,376 - GFF1669 0.48 +0.1 315,462 + GFF1669 0.54 +0.1 315,462 + GFF1669 0.54 +0.5 315,463 - GFF1669 0.54 +0.4 315,463 - GFF1669 0.54 +0.8 315,501 + GFF1669 0.57 +1.0 315,502 - GFF1669 0.57 -0.1 316,316 - GFF1670 0.48 -0.1 316,316 - GFF1670 0.48 -0.3 316,665 + -0.4 316,666 - +0.3 316,965 + GFF1671 0.29 +0.8 316,992 + GFF1671 0.32 +0.6
Or see this region's nucleotide sequence