Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1624 and GFF1625 are separated by 212 nucleotides GFF1625 and GFF1626 are separated by 71 nucleotides GFF1626 and GFF1627 are separated by 75 nucleotides
GFF1624 - Alcohol dehydrogenase (EC 1.1.1.1), at 224,728 to 225,819
GFF1624
GFF1625 - Transcriptional regulator, LysR family, at 226,032 to 226,898
GFF1625
GFF1626 - hypothetical protein, at 226,970 to 227,512
GFF1626
GFF1627 - ABC-type siderophore export system, fused ATPase and permease components, at 227,588 to 229,267
GFF1627
Position (kb) 226
227 Strain fitness (log2 ratio) -1
0
1 at 225.338 kb on + strand, within GFF1624 at 225.943 kb on + strand at 226.234 kb on - strand, within GFF1625 at 226.670 kb on - strand, within GFF1625 at 226.825 kb on - strand at 226.971 kb on + strand at 226.971 kb on + strand at 226.972 kb on - strand at 227.745 kb on + strand at 227.746 kb on - strand at 227.820 kb on + strand, within GFF1627 at 227.820 kb on + strand, within GFF1627 at 227.869 kb on - strand, within GFF1627
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 225,338 + GFF1624 0.56 -1.3 225,943 + -0.5 226,234 - GFF1625 0.23 -0.6 226,670 - GFF1625 0.74 -1.0 226,825 - -0.2 226,971 + +1.1 226,971 + +0.4 226,972 - +0.6 227,745 + -1.0 227,746 - +0.2 227,820 + GFF1627 0.14 -1.0 227,820 + GFF1627 0.14 -0.8 227,869 - GFF1627 0.17 +0.8
Or see this region's nucleotide sequence