Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1582 and GFF1583 are separated by 22 nucleotides GFF1583 and GFF1584 are separated by 6 nucleotides GFF1584 and GFF1585 are separated by 172 nucleotides
GFF1582 - BUG/TctC family periplasmic protein, at 181,135 to 182,139
GFF1582
GFF1583 - Fumarate hydratase class I, beta region (EC 4.2.1.2); L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32), at 182,162 to 182,779
GFF1583
GFF1584 - Fumarate hydratase class I, alpha region (EC 4.2.1.2); L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32), at 182,786 to 183,658
GFF1584
GFF1585 - Outer membrane porin protein 32 precursor, at 183,831 to 185,048
GFF1585
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1 at 181.796 kb on + strand, within GFF1582 at 181.797 kb on - strand, within GFF1582 at 181.847 kb on + strand, within GFF1582 at 182.331 kb on + strand, within GFF1583 at 182.409 kb on + strand, within GFF1583 at 182.409 kb on + strand, within GFF1583 at 182.409 kb on + strand, within GFF1583 at 182.409 kb on + strand, within GFF1583 at 182.410 kb on - strand, within GFF1583 at 182.548 kb on - strand, within GFF1583 at 182.787 kb on + strand at 182.788 kb on - strand at 182.820 kb on + strand at 182.820 kb on + strand at 182.821 kb on - strand at 182.876 kb on + strand, within GFF1584 at 183.246 kb on + strand, within GFF1584 at 183.247 kb on - strand, within GFF1584 at 183.301 kb on - strand, within GFF1584 at 183.301 kb on - strand, within GFF1584 at 183.442 kb on - strand, within GFF1584 at 183.442 kb on - strand, within GFF1584 at 183.442 kb on - strand, within GFF1584 at 183.612 kb on + strand at 183.612 kb on + strand at 183.663 kb on - strand at 183.663 kb on - strand at 184.294 kb on - strand, within GFF1585 at 184.395 kb on + strand, within GFF1585 at 184.396 kb on - strand, within GFF1585 at 184.396 kb on - strand, within GFF1585 at 184.396 kb on - strand, within GFF1585 at 184.425 kb on + strand, within GFF1585 at 184.426 kb on - strand, within GFF1585 at 184.426 kb on - strand, within GFF1585 at 184.440 kb on + strand, within GFF1585 at 184.441 kb on - strand, within GFF1585 at 184.441 kb on - strand, within GFF1585 at 184.441 kb on - strand, within GFF1585 at 184.596 kb on + strand, within GFF1585 at 184.596 kb on + strand, within GFF1585 at 184.597 kb on - strand, within GFF1585 at 184.648 kb on - strand, within GFF1585
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 181,796 + GFF1582 0.66 -0.6 181,797 - GFF1582 0.66 +0.7 181,847 + GFF1582 0.71 -0.2 182,331 + GFF1583 0.27 -0.7 182,409 + GFF1583 0.40 -0.2 182,409 + GFF1583 0.40 +0.4 182,409 + GFF1583 0.40 +1.2 182,409 + GFF1583 0.40 +0.2 182,410 - GFF1583 0.40 +0.1 182,548 - GFF1583 0.62 -1.1 182,787 + -1.2 182,788 - +0.2 182,820 + -0.6 182,820 + -0.2 182,821 - +0.2 182,876 + GFF1584 0.10 -0.2 183,246 + GFF1584 0.53 -0.6 183,247 - GFF1584 0.53 +0.9 183,301 - GFF1584 0.59 -0.3 183,301 - GFF1584 0.59 -1.6 183,442 - GFF1584 0.75 +0.2 183,442 - GFF1584 0.75 -1.2 183,442 - GFF1584 0.75 -0.8 183,612 + +0.1 183,612 + +1.7 183,663 - -1.4 183,663 - -1.8 184,294 - GFF1585 0.38 -1.3 184,395 + GFF1585 0.46 +1.0 184,396 - GFF1585 0.46 -0.9 184,396 - GFF1585 0.46 +0.4 184,396 - GFF1585 0.46 -0.1 184,425 + GFF1585 0.49 -0.5 184,426 - GFF1585 0.49 +0.0 184,426 - GFF1585 0.49 -0.8 184,440 + GFF1585 0.50 -0.7 184,441 - GFF1585 0.50 -0.2 184,441 - GFF1585 0.50 -0.3 184,441 - GFF1585 0.50 -0.3 184,596 + GFF1585 0.63 -0.1 184,596 + GFF1585 0.63 -1.2 184,597 - GFF1585 0.63 -0.1 184,648 - GFF1585 0.67 +0.6
Or see this region's nucleotide sequence