Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1558 and GFF1559 are separated by 9 nucleotides GFF1559 and GFF1560 are separated by 186 nucleotides GFF1560 and GFF1561 are separated by 42 nucleotides
GFF1558 - Uncharacterized ATP-dependent DNA helicase PA3272, at 156,614 to 160,987
GFF1558
GFF1559 - Mg(2+)-transport-ATPase-associated protein MgtC, at 160,997 to 161,716
GFF1559
GFF1560 - hypothetical protein, at 161,903 to 162,370
GFF1560
GFF1561 - Aldehyde dehydrogenase (EC 1.2.1.3), at 162,413 to 163,849
GFF1561
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1 at 160.337 kb on + strand, within GFF1558 at 160.337 kb on + strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 161.277 kb on + strand, within GFF1559 at 161.349 kb on + strand, within GFF1559 at 161.775 kb on + strand at 161.775 kb on + strand at 161.776 kb on - strand at 161.814 kb on + strand at 161.815 kb on - strand at 161.855 kb on + strand at 161.856 kb on - strand at 161.884 kb on + strand at 161.885 kb on - strand at 161.885 kb on - strand at 162.213 kb on + strand, within GFF1560 at 162.463 kb on - strand at 162.639 kb on + strand, within GFF1561 at 162.685 kb on - strand, within GFF1561
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 160,337 + GFF1558 0.85 +0.8 160,337 + GFF1558 0.85 -1.2 160,338 - GFF1558 0.85 +0.3 160,338 - GFF1558 0.85 +0.8 161,277 + GFF1559 0.39 -0.8 161,349 + GFF1559 0.49 -0.4 161,775 + -1.8 161,775 + -0.2 161,776 - -0.1 161,814 + -0.2 161,815 - -0.4 161,855 + -0.6 161,856 - +1.0 161,884 + -0.1 161,885 - -1.5 161,885 - -1.0 162,213 + GFF1560 0.66 -0.7 162,463 - +0.4 162,639 + GFF1561 0.16 -0.9 162,685 - GFF1561 0.19 -0.1
Or see this region's nucleotide sequence