Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1548 and GFF1549 are separated by 13 nucleotides GFF1549 and GFF1550 are separated by 200 nucleotides GFF1550 and GFF1551 are separated by 14 nucleotides
GFF1548 - Tripartite tricarboxylate transporter TctA family, at 147,007 to 148,533
GFF1548
GFF1549 - Tripartite tricarboxylate transporter TctB family, at 148,547 to 148,948
GFF1549
GFF1550 - no description, at 149,149 to 149,814
GFF1550
GFF1551 - hypothetical protein, at 149,829 to 151,268
GFF1551
Position (kb) 149
150 Strain fitness (log2 ratio) -1
0
1 at 148.331 kb on + strand, within GFF1548 at 148.376 kb on + strand, within GFF1548 at 148.376 kb on + strand, within GFF1548 at 148.376 kb on + strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.377 kb on - strand, within GFF1548 at 148.440 kb on + strand at 148.440 kb on + strand at 148.441 kb on - strand at 148.441 kb on - strand at 148.441 kb on - strand at 148.469 kb on + strand at 148.469 kb on + strand at 148.906 kb on - strand, within GFF1549 at 148.917 kb on + strand at 148.918 kb on - strand at 149.102 kb on + strand at 149.102 kb on + strand at 149.103 kb on - strand at 149.133 kb on + strand at 149.133 kb on + strand at 149.133 kb on + strand at 149.134 kb on - strand at 149.134 kb on - strand at 149.134 kb on - strand at 149.134 kb on - strand at 149.137 kb on + strand at 149.137 kb on + strand at 149.137 kb on + strand at 149.137 kb on + strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.138 kb on - strand at 149.145 kb on + strand at 149.145 kb on + strand at 149.145 kb on + strand at 149.146 kb on - strand at 149.146 kb on - strand at 149.146 kb on - strand at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.530 kb on + strand, within GFF1550 at 149.531 kb on - strand, within GFF1550 at 149.574 kb on - strand, within GFF1550 at 149.659 kb on + strand, within GFF1550 at 149.659 kb on + strand, within GFF1550 at 149.659 kb on + strand, within GFF1550 at 149.659 kb on + strand, within GFF1550 at 149.660 kb on - strand, within GFF1550 at 149.660 kb on - strand, within GFF1550 at 149.660 kb on - strand, within GFF1550 at 149.660 kb on - strand, within GFF1550 at 149.660 kb on - strand, within GFF1550 at 149.749 kb on + strand at 149.830 kb on + strand at 149.831 kb on - strand at 150.106 kb on + strand, within GFF1551 at 150.298 kb on + strand, within GFF1551 at 150.298 kb on + strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.299 kb on - strand, within GFF1551 at 150.661 kb on + strand, within GFF1551 at 150.661 kb on + strand, within GFF1551 at 150.661 kb on + strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.662 kb on - strand, within GFF1551 at 150.676 kb on + strand, within GFF1551 at 150.677 kb on - strand, within GFF1551 at 150.765 kb on + strand, within GFF1551 at 150.766 kb on - strand, within GFF1551
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,331 + GFF1548 0.87 -0.4 148,376 + GFF1548 0.90 -0.3 148,376 + GFF1548 0.90 +0.4 148,376 + GFF1548 0.90 -0.6 148,377 - GFF1548 0.90 -0.2 148,377 - GFF1548 0.90 -0.4 148,377 - GFF1548 0.90 -1.4 148,377 - GFF1548 0.90 -0.0 148,377 - GFF1548 0.90 -0.2 148,440 + -0.8 148,440 + +1.2 148,441 - -0.2 148,441 - +0.3 148,441 - -0.1 148,469 + -0.2 148,469 + -0.3 148,906 - GFF1549 0.89 +1.2 148,917 + +0.7 148,918 - -0.8 149,102 + -0.3 149,102 + -0.2 149,103 - +0.3 149,133 + +0.3 149,133 + -0.3 149,133 + -0.3 149,134 - +0.2 149,134 - -0.3 149,134 - +0.4 149,134 - -0.4 149,137 + -0.6 149,137 + +0.7 149,137 + +0.4 149,137 + +0.7 149,138 - +0.6 149,138 - -0.7 149,138 - -0.3 149,138 - +0.7 149,138 - +1.4 149,138 - +1.3 149,145 + -0.8 149,145 + -0.3 149,145 + -0.2 149,146 - +0.7 149,146 - -0.4 149,146 - +0.7 149,530 + GFF1550 0.57 +0.2 149,530 + GFF1550 0.57 -1.0 149,530 + GFF1550 0.57 +0.4 149,530 + GFF1550 0.57 -0.4 149,530 + GFF1550 0.57 -0.3 149,531 - GFF1550 0.57 -0.1 149,574 - GFF1550 0.64 -1.3 149,659 + GFF1550 0.77 -0.7 149,659 + GFF1550 0.77 -1.1 149,659 + GFF1550 0.77 -0.5 149,659 + GFF1550 0.77 +0.7 149,660 - GFF1550 0.77 -0.4 149,660 - GFF1550 0.77 +0.2 149,660 - GFF1550 0.77 -0.6 149,660 - GFF1550 0.77 -0.3 149,660 - GFF1550 0.77 -1.3 149,749 + -0.9 149,830 + -0.7 149,831 - -0.6 150,106 + GFF1551 0.19 -0.2 150,298 + GFF1551 0.33 -1.4 150,298 + GFF1551 0.33 -0.7 150,299 - GFF1551 0.33 -0.7 150,299 - GFF1551 0.33 +0.0 150,299 - GFF1551 0.33 +0.0 150,299 - GFF1551 0.33 -0.8 150,661 + GFF1551 0.58 +0.2 150,661 + GFF1551 0.58 +0.2 150,661 + GFF1551 0.58 +0.2 150,662 - GFF1551 0.58 -0.5 150,662 - GFF1551 0.58 +0.2 150,662 - GFF1551 0.58 -1.3 150,662 - GFF1551 0.58 -0.1 150,676 + GFF1551 0.59 +0.0 150,677 - GFF1551 0.59 -0.2 150,765 + GFF1551 0.65 -0.4 150,766 - GFF1551 0.65 -1.7
Or see this region's nucleotide sequence