Strain Fitness in Variovorax sp. SCN45 around GFF1515

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1514 and GFF1515 are separated by 82 nucleotidesGFF1515 and GFF1516 are separated by 1 nucleotides GFF1514 - hypothetical protein, at 107,809 to 110,031 GFF1514 GFF1515 - Flagellar hook-length control protein FliK, at 110,114 to 111,541 GFF1515 GFF1516 - TRAP-type C4-dicarboxylate transport system, large permease component, at 111,543 to 112,823 GFF1516 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2 3at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.117 kb on + strand, within GFF1514at 109.118 kb on - strand, within GFF1514at 109.118 kb on - strand, within GFF1514at 109.118 kb on - strand, within GFF1514at 109.118 kb on - strand, within GFF1514at 109.118 kb on - strand, within GFF1514at 109.135 kb on + strand, within GFF1514at 109.136 kb on - strand, within GFF1514at 109.211 kb on - strand, within GFF1514at 109.211 kb on - strand, within GFF1514at 109.211 kb on - strand, within GFF1514at 109.211 kb on - strand, within GFF1514at 109.234 kb on + strand, within GFF1514at 109.235 kb on - strand, within GFF1514at 109.249 kb on + strand, within GFF1514at 109.249 kb on + strand, within GFF1514at 109.249 kb on + strand, within GFF1514at 109.249 kb on + strand, within GFF1514at 109.250 kb on - strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.309 kb on + strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.310 kb on - strand, within GFF1514at 109.534 kb on + strand, within GFF1514at 109.534 kb on + strand, within GFF1514at 109.535 kb on - strand, within GFF1514at 109.535 kb on - strand, within GFF1514at 109.555 kb on + strand, within GFF1514at 109.555 kb on + strand, within GFF1514at 109.556 kb on - strand, within GFF1514at 109.556 kb on - strand, within GFF1514at 109.556 kb on - strand, within GFF1514at 109.953 kb on + strandat 109.953 kb on + strandat 109.975 kb on + strandat 109.976 kb on - strandat 109.976 kb on - strandat 109.981 kb on + strandat 110.174 kb on + strandat 110.487 kb on - strand, within GFF1515at 110.508 kb on + strand, within GFF1515at 110.509 kb on - strand, within GFF1515at 110.509 kb on - strand, within GFF1515at 110.509 kb on - strand, within GFF1515at 110.652 kb on + strand, within GFF1515at 110.652 kb on + strand, within GFF1515at 110.796 kb on + strand, within GFF1515at 110.796 kb on + strand, within GFF1515at 110.796 kb on + strand, within GFF1515at 110.797 kb on - strand, within GFF1515at 110.797 kb on - strand, within GFF1515at 110.797 kb on - strand, within GFF1515at 110.797 kb on - strand, within GFF1515at 110.797 kb on - strand, within GFF1515at 111.081 kb on + strand, within GFF1515at 111.081 kb on + strand, within GFF1515at 111.225 kb on + strand, within GFF1515at 111.226 kb on - strand, within GFF1515at 111.226 kb on - strand, within GFF1515at 111.226 kb on - strand, within GFF1515at 111.226 kb on - strand, within GFF1515at 111.226 kb on - strand, within GFF1515at 111.758 kb on - strand, within GFF1516at 112.030 kb on + strand, within GFF1516at 112.030 kb on + strand, within GFF1516at 112.031 kb on - strand, within GFF1516at 112.031 kb on - strand, within GFF1516at 112.329 kb on + strand, within GFF1516at 112.329 kb on + strand, within GFF1516at 112.329 kb on + strand, within GFF1516at 112.329 kb on + strand, within GFF1516at 112.329 kb on + strand, within GFF1516at 112.329 kb on + strand, within GFF1516at 112.330 kb on - strand, within GFF1516at 112.351 kb on - strand, within GFF1516at 112.540 kb on + strand, within GFF1516at 112.540 kb on + strand, within GFF1516at 112.540 kb on + strand, within GFF1516

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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109,117 + GFF1514 0.59 +1.0
109,117 + GFF1514 0.59 -0.8
109,117 + GFF1514 0.59 -0.2
109,117 + GFF1514 0.59 -0.3
109,117 + GFF1514 0.59 +0.3
109,117 + GFF1514 0.59 -0.5
109,117 + GFF1514 0.59 +0.1
109,117 + GFF1514 0.59 +0.2
109,117 + GFF1514 0.59 -0.1
109,117 + GFF1514 0.59 -0.1
109,117 + GFF1514 0.59 -0.7
109,118 - GFF1514 0.59 -0.4
109,118 - GFF1514 0.59 -1.1
109,118 - GFF1514 0.59 -0.1
109,118 - GFF1514 0.59 -0.8
109,118 - GFF1514 0.59 +0.7
109,135 + GFF1514 0.60 +1.3
109,136 - GFF1514 0.60 +0.2
109,211 - GFF1514 0.63 -0.3
109,211 - GFF1514 0.63 +0.5
109,211 - GFF1514 0.63 -0.1
109,211 - GFF1514 0.63 -0.2
109,234 + GFF1514 0.64 -1.0
109,235 - GFF1514 0.64 +0.4
109,249 + GFF1514 0.65 -0.4
109,249 + GFF1514 0.65 -0.9
109,249 + GFF1514 0.65 -0.3
109,249 + GFF1514 0.65 +0.6
109,250 - GFF1514 0.65 -0.3
109,309 + GFF1514 0.67 -0.8
109,309 + GFF1514 0.67 +0.5
109,309 + GFF1514 0.67 +0.2
109,309 + GFF1514 0.67 -1.0
109,309 + GFF1514 0.67 +0.3
109,309 + GFF1514 0.67 -0.4
109,309 + GFF1514 0.67 +0.8
109,309 + GFF1514 0.67 -1.4
109,309 + GFF1514 0.67 -0.7
109,309 + GFF1514 0.67 -0.5
109,309 + GFF1514 0.67 +0.3
109,309 + GFF1514 0.67 +0.2
109,310 - GFF1514 0.68 +0.7
109,310 - GFF1514 0.68 +1.2
109,310 - GFF1514 0.68 -0.6
109,310 - GFF1514 0.68 +1.0
109,310 - GFF1514 0.68 -0.1
109,310 - GFF1514 0.68 +0.0
109,310 - GFF1514 0.68 -0.2
109,310 - GFF1514 0.68 +0.2
109,310 - GFF1514 0.68 -0.4
109,534 + GFF1514 0.78 +0.3
109,534 + GFF1514 0.78 +3.3
109,535 - GFF1514 0.78 +0.6
109,535 - GFF1514 0.78 -0.2
109,555 + GFF1514 0.79 +0.5
109,555 + GFF1514 0.79 -0.3
109,556 - GFF1514 0.79 -0.2
109,556 - GFF1514 0.79 -1.4
109,556 - GFF1514 0.79 -0.7
109,953 + -1.2
109,953 + -0.1
109,975 + -0.4
109,976 - -1.4
109,976 - -0.4
109,981 + +0.7
110,174 + +0.4
110,487 - GFF1515 0.26 -1.2
110,508 + GFF1515 0.28 -0.2
110,509 - GFF1515 0.28 -0.0
110,509 - GFF1515 0.28 +0.7
110,509 - GFF1515 0.28 +0.4
110,652 + GFF1515 0.38 -0.4
110,652 + GFF1515 0.38 -0.3
110,796 + GFF1515 0.48 +0.1
110,796 + GFF1515 0.48 -0.7
110,796 + GFF1515 0.48 +0.5
110,797 - GFF1515 0.48 +0.7
110,797 - GFF1515 0.48 +0.5
110,797 - GFF1515 0.48 -0.6
110,797 - GFF1515 0.48 +0.3
110,797 - GFF1515 0.48 -0.6
111,081 + GFF1515 0.68 +0.3
111,081 + GFF1515 0.68 +0.7
111,225 + GFF1515 0.78 -0.2
111,226 - GFF1515 0.78 +0.7
111,226 - GFF1515 0.78 +0.4
111,226 - GFF1515 0.78 -0.4
111,226 - GFF1515 0.78 +1.7
111,226 - GFF1515 0.78 -0.0
111,758 - GFF1516 0.17 +0.1
112,030 + GFF1516 0.38 +0.2
112,030 + GFF1516 0.38 -0.2
112,031 - GFF1516 0.38 +0.0
112,031 - GFF1516 0.38 -2.2
112,329 + GFF1516 0.61 -0.5
112,329 + GFF1516 0.61 -0.9
112,329 + GFF1516 0.61 -1.1
112,329 + GFF1516 0.61 -0.7
112,329 + GFF1516 0.61 +0.1
112,329 + GFF1516 0.61 -0.3
112,330 - GFF1516 0.61 -0.3
112,351 - GFF1516 0.63 -0.3
112,540 + GFF1516 0.78 -0.9
112,540 + GFF1516 0.78 -0.1
112,540 + GFF1516 0.78 -0.7

Or see this region's nucleotide sequence