Strain Fitness in Variovorax sp. SCN45 around GFF146

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF145 and GFF146 are separated by 297 nucleotidesGFF146 and GFF147 are separated by 18 nucleotidesGFF147 and GFF148 are separated by 114 nucleotides GFF145 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 173,605 to 174,984 GFF145 GFF146 - hypothetical protein, at 175,282 to 176,145 GFF146 GFF147 - Transcriptional regulator, at 176,164 to 176,475 GFF147 GFF148 - Transcriptional regulator, LysR family, at 176,590 to 177,483 GFF148 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2 3at 174.459 kb on - strand, within GFF145at 174.518 kb on + strand, within GFF145at 174.518 kb on + strand, within GFF145at 174.519 kb on - strand, within GFF145at 174.519 kb on - strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.629 kb on + strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.630 kb on - strand, within GFF145at 174.632 kb on - strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.818 kb on + strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 174.819 kb on - strand, within GFF145at 175.023 kb on + strandat 175.023 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.316 kb on + strandat 175.317 kb on - strandat 175.317 kb on - strandat 175.317 kb on - strandat 175.397 kb on + strand, within GFF146at 175.529 kb on + strand, within GFF146at 175.530 kb on - strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.649 kb on + strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.650 kb on - strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.712 kb on + strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.713 kb on - strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.715 kb on + strand, within GFF146at 175.820 kb on + strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 175.821 kb on - strand, within GFF146at 176.139 kb on + strandat 176.139 kb on + strandat 176.140 kb on - strandat 176.140 kb on - strandat 176.140 kb on - strandat 176.140 kb on - strandat 176.406 kb on - strand, within GFF147at 176.406 kb on - strand, within GFF147at 176.406 kb on - strand, within GFF147at 176.449 kb on - strandat 176.450 kb on + strandat 176.450 kb on + strandat 176.451 kb on - strandat 176.537 kb on - strandat 176.559 kb on + strandat 176.560 kb on - strandat 176.560 kb on - strandat 176.560 kb on - strandat 176.560 kb on - strandat 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148at 176.999 kb on + strand, within GFF148

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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174,459 - GFF145 0.62 +0.9
174,518 + GFF145 0.66 +0.5
174,518 + GFF145 0.66 -0.7
174,519 - GFF145 0.66 +0.1
174,519 - GFF145 0.66 +0.4
174,629 + GFF145 0.74 -0.5
174,629 + GFF145 0.74 -1.1
174,629 + GFF145 0.74 -0.9
174,629 + GFF145 0.74 -0.2
174,629 + GFF145 0.74 +0.2
174,630 - GFF145 0.74 +0.7
174,630 - GFF145 0.74 -0.3
174,630 - GFF145 0.74 +0.0
174,630 - GFF145 0.74 -0.1
174,630 - GFF145 0.74 +0.3
174,630 - GFF145 0.74 +0.3
174,630 - GFF145 0.74 +0.7
174,632 - GFF145 0.74 -1.2
174,818 + GFF145 0.88 -0.1
174,818 + GFF145 0.88 +0.5
174,818 + GFF145 0.88 -0.6
174,818 + GFF145 0.88 -0.8
174,818 + GFF145 0.88 -0.8
174,819 - GFF145 0.88 -0.0
174,819 - GFF145 0.88 -0.6
174,819 - GFF145 0.88 -0.2
174,819 - GFF145 0.88 +0.2
174,819 - GFF145 0.88 -0.9
174,819 - GFF145 0.88 -0.1
174,819 - GFF145 0.88 +1.4
174,819 - GFF145 0.88 -0.5
175,023 + -0.3
175,023 + +0.1
175,316 + -1.9
175,316 + -0.1
175,316 + +0.3
175,316 + -0.4
175,316 + -1.9
175,316 + +0.9
175,317 - -0.4
175,317 - -0.7
175,317 - +0.3
175,397 + GFF146 0.13 -0.2
175,529 + GFF146 0.29 -0.0
175,530 - GFF146 0.29 -0.6
175,649 + GFF146 0.42 -0.3
175,649 + GFF146 0.42 +0.0
175,649 + GFF146 0.42 -2.4
175,649 + GFF146 0.42 +3.3
175,649 + GFF146 0.42 +0.6
175,650 - GFF146 0.43 -0.0
175,650 - GFF146 0.43 -0.9
175,650 - GFF146 0.43 -0.9
175,650 - GFF146 0.43 -0.7
175,650 - GFF146 0.43 -0.5
175,650 - GFF146 0.43 -1.2
175,650 - GFF146 0.43 +0.9
175,712 + GFF146 0.50 -1.9
175,712 + GFF146 0.50 -0.5
175,712 + GFF146 0.50 -0.6
175,712 + GFF146 0.50 -0.6
175,712 + GFF146 0.50 +0.9
175,712 + GFF146 0.50 -0.9
175,712 + GFF146 0.50 -0.5
175,712 + GFF146 0.50 +0.1
175,712 + GFF146 0.50 -0.3
175,712 + GFF146 0.50 -0.2
175,712 + GFF146 0.50 -0.0
175,713 - GFF146 0.50 +0.6
175,713 - GFF146 0.50 +0.7
175,713 - GFF146 0.50 -1.9
175,713 - GFF146 0.50 -0.6
175,713 - GFF146 0.50 +0.7
175,713 - GFF146 0.50 +0.6
175,713 - GFF146 0.50 -0.5
175,713 - GFF146 0.50 -0.4
175,713 - GFF146 0.50 +0.5
175,713 - GFF146 0.50 -0.0
175,713 - GFF146 0.50 -0.3
175,713 - GFF146 0.50 -1.3
175,713 - GFF146 0.50 -0.2
175,713 - GFF146 0.50 -0.3
175,713 - GFF146 0.50 -0.6
175,713 - GFF146 0.50 +1.1
175,713 - GFF146 0.50 -0.9
175,713 - GFF146 0.50 -0.7
175,715 + GFF146 0.50 -0.4
175,715 + GFF146 0.50 -1.3
175,715 + GFF146 0.50 +0.1
175,715 + GFF146 0.50 +0.0
175,820 + GFF146 0.62 +0.2
175,821 - GFF146 0.62 -0.8
175,821 - GFF146 0.62 -0.3
175,821 - GFF146 0.62 -0.7
175,821 - GFF146 0.62 -1.1
176,139 + +0.4
176,139 + +0.3
176,140 - +0.6
176,140 - +0.1
176,140 - -0.7
176,140 - -0.4
176,406 - GFF147 0.78 -1.1
176,406 - GFF147 0.78 -0.6
176,406 - GFF147 0.78 -0.1
176,449 - +0.1
176,450 + -1.0
176,450 + +0.1
176,451 - -0.4
176,537 - +0.4
176,559 + +0.3
176,560 - -0.2
176,560 - -1.0
176,560 - +0.6
176,560 - +0.3
176,999 + GFF148 0.46 -0.0
176,999 + GFF148 0.46 -0.2
176,999 + GFF148 0.46 -0.2
176,999 + GFF148 0.46 -0.0
176,999 + GFF148 0.46 -0.8

Or see this region's nucleotide sequence