Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1450 and GFF1451 are separated by 5 nucleotides GFF1451 and GFF1452 are separated by 43 nucleotides GFF1452 and GFF1453 are separated by 6 nucleotides
GFF1450 - similar to ribulose-1,5-bisphosphate carboxylase, Type III, at 42,046 to 43,314
GFF1450
GFF1451 - FIG00456379: hypothetical protein, at 43,320 to 43,859
GFF1451
GFF1452 - Predicted gluconate TRAP family transporter, DctM subunit, at 43,903 to 45,792
GFF1452
GFF1453 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 45,799 to 46,818
GFF1453
Position (kb) 43
44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.286 kb on + strand at 43.457 kb on - strand, within GFF1451 at 43.556 kb on - strand, within GFF1451 at 43.571 kb on - strand, within GFF1451 at 43.667 kb on - strand, within GFF1451 at 43.753 kb on + strand, within GFF1451 at 43.754 kb on - strand, within GFF1451 at 43.754 kb on - strand, within GFF1451 at 43.754 kb on - strand, within GFF1451 at 43.789 kb on + strand, within GFF1451 at 43.789 kb on + strand, within GFF1451 at 43.822 kb on + strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.823 kb on - strand at 43.980 kb on - strand at 44.042 kb on + strand at 44.042 kb on + strand at 44.043 kb on - strand at 44.106 kb on - strand, within GFF1452 at 44.237 kb on + strand, within GFF1452 at 44.237 kb on + strand, within GFF1452 at 44.238 kb on - strand, within GFF1452 at 44.238 kb on - strand, within GFF1452 at 44.564 kb on + strand, within GFF1452 at 44.565 kb on - strand, within GFF1452 at 44.565 kb on - strand, within GFF1452 at 44.870 kb on + strand, within GFF1452 at 44.871 kb on - strand, within GFF1452 at 44.891 kb on + strand, within GFF1452 at 44.891 kb on + strand, within GFF1452 at 44.891 kb on + strand, within GFF1452 at 45.598 kb on + strand, within GFF1452 at 45.598 kb on + strand, within GFF1452 at 45.599 kb on - strand, within GFF1452 at 45.599 kb on - strand, within GFF1452 at 45.599 kb on - strand, within GFF1452 at 45.620 kb on + strand at 45.872 kb on + strand at 46.205 kb on + strand, within GFF1453 at 46.205 kb on + strand, within GFF1453 at 46.205 kb on + strand, within GFF1453 at 46.205 kb on + strand, within GFF1453 at 46.206 kb on - strand, within GFF1453 at 46.206 kb on - strand, within GFF1453 at 46.206 kb on - strand, within GFF1453 at 46.382 kb on + strand, within GFF1453 at 46.382 kb on + strand, within GFF1453 at 46.383 kb on - strand, within GFF1453 at 46.383 kb on - strand, within GFF1453 at 46.457 kb on + strand, within GFF1453 at 46.457 kb on + strand, within GFF1453 at 46.457 kb on + strand, within GFF1453 at 46.458 kb on - strand, within GFF1453 at 46.458 kb on - strand, within GFF1453 at 46.458 kb on - strand, within GFF1453 at 46.458 kb on - strand, within GFF1453 at 46.458 kb on - strand, within GFF1453 at 46.706 kb on + strand, within GFF1453 at 46.706 kb on + strand, within GFF1453 at 46.706 kb on + strand, within GFF1453 at 46.707 kb on - strand, within GFF1453 at 46.707 kb on - strand, within GFF1453 at 46.707 kb on - strand, within GFF1453 at 46.707 kb on - strand, within GFF1453 at 46.712 kb on + strand, within GFF1453 at 46.713 kb on - strand, within GFF1453 at 46.713 kb on - strand, within GFF1453 at 46.713 kb on - strand, within GFF1453
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 43,286 + -0.1 43,457 - GFF1451 0.25 -0.1 43,556 - GFF1451 0.44 +0.2 43,571 - GFF1451 0.46 +0.7 43,667 - GFF1451 0.64 -1.3 43,753 + GFF1451 0.80 +0.6 43,754 - GFF1451 0.80 +0.5 43,754 - GFF1451 0.80 +0.2 43,754 - GFF1451 0.80 -0.1 43,789 + GFF1451 0.87 -0.3 43,789 + GFF1451 0.87 -0.6 43,822 + -0.0 43,823 - -0.3 43,823 - -1.3 43,823 - +0.7 43,823 - +0.2 43,823 - -0.2 43,980 - +0.3 44,042 + -0.7 44,042 + -0.2 44,043 - -0.5 44,106 - GFF1452 0.11 -0.2 44,237 + GFF1452 0.18 +0.0 44,237 + GFF1452 0.18 -1.7 44,238 - GFF1452 0.18 +0.3 44,238 - GFF1452 0.18 +0.2 44,564 + GFF1452 0.35 +0.5 44,565 - GFF1452 0.35 +0.2 44,565 - GFF1452 0.35 +1.2 44,870 + GFF1452 0.51 -0.2 44,871 - GFF1452 0.51 -1.6 44,891 + GFF1452 0.52 -1.0 44,891 + GFF1452 0.52 -0.9 44,891 + GFF1452 0.52 +0.2 45,598 + GFF1452 0.90 -0.3 45,598 + GFF1452 0.90 -0.1 45,599 - GFF1452 0.90 +0.8 45,599 - GFF1452 0.90 +1.3 45,599 - GFF1452 0.90 +0.6 45,620 + +0.4 45,872 + +0.1 46,205 + GFF1453 0.40 -0.0 46,205 + GFF1453 0.40 -0.7 46,205 + GFF1453 0.40 -0.3 46,205 + GFF1453 0.40 -0.5 46,206 - GFF1453 0.40 -1.8 46,206 - GFF1453 0.40 -0.7 46,206 - GFF1453 0.40 -1.4 46,382 + GFF1453 0.57 +1.4 46,382 + GFF1453 0.57 -0.5 46,383 - GFF1453 0.57 -1.1 46,383 - GFF1453 0.57 -0.1 46,457 + GFF1453 0.65 -0.1 46,457 + GFF1453 0.65 +0.2 46,457 + GFF1453 0.65 +0.6 46,458 - GFF1453 0.65 +0.0 46,458 - GFF1453 0.65 -0.2 46,458 - GFF1453 0.65 -0.1 46,458 - GFF1453 0.65 -0.6 46,458 - GFF1453 0.65 +0.7 46,706 + GFF1453 0.89 +0.0 46,706 + GFF1453 0.89 +0.0 46,706 + GFF1453 0.89 -1.1 46,707 - GFF1453 0.89 -0.2 46,707 - GFF1453 0.89 -0.7 46,707 - GFF1453 0.89 +2.1 46,707 - GFF1453 0.89 -1.0 46,712 + GFF1453 0.90 +0.3 46,713 - GFF1453 0.90 -0.6 46,713 - GFF1453 0.90 +0.7 46,713 - GFF1453 0.90 -0.4
Or see this region's nucleotide sequence