Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF142 and GFF143 overlap by 18 nucleotides GFF143 and GFF144 overlap by 4 nucleotides GFF144 and GFF145 overlap by 17 nucleotides
GFF142 - Oxidoreductase, at 170,605 to 171,657
GFF142
GFF143 - Dethiobiotin synthase BioD (EC 6.3.3.3), at 171,640 to 172,386
GFF143
GFF144 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 172,383 to 173,621
GFF144
GFF145 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 173,605 to 174,984
GFF145
Position (kb) 172
173
174 Strain fitness (log2 ratio) -1
0
1
2 at 171.583 kb on + strand at 172.160 kb on + strand, within GFF143 at 172.160 kb on + strand, within GFF143 at 172.161 kb on - strand, within GFF143 at 172.798 kb on + strand, within GFF144 at 172.798 kb on + strand, within GFF144 at 172.798 kb on + strand, within GFF144 at 172.799 kb on - strand, within GFF144 at 172.822 kb on + strand, within GFF144 at 172.822 kb on + strand, within GFF144 at 173.037 kb on + strand, within GFF144 at 173.037 kb on + strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.140 kb on + strand, within GFF144 at 173.262 kb on - strand, within GFF144 at 173.263 kb on + strand, within GFF144 at 173.263 kb on + strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.455 kb on + strand, within GFF144 at 173.455 kb on + strand, within GFF144 at 173.717 kb on + strand at 173.717 kb on + strand at 173.717 kb on + strand at 173.718 kb on - strand at 173.732 kb on + strand at 173.732 kb on + strand at 173.732 kb on + strand at 173.733 kb on - strand at 173.733 kb on - strand at 173.733 kb on - strand at 173.733 kb on - strand at 174.003 kb on - strand, within GFF145 at 174.003 kb on - strand, within GFF145 at 174.003 kb on - strand, within GFF145 at 174.003 kb on - strand, within GFF145 at 174.056 kb on + strand, within GFF145 at 174.056 kb on + strand, within GFF145 at 174.056 kb on + strand, within GFF145 at 174.056 kb on + strand, within GFF145 at 174.056 kb on + strand, within GFF145 at 174.057 kb on - strand, within GFF145 at 174.057 kb on - strand, within GFF145 at 174.057 kb on - strand, within GFF145 at 174.057 kb on - strand, within GFF145 at 174.057 kb on - strand, within GFF145 at 174.095 kb on + strand, within GFF145 at 174.095 kb on + strand, within GFF145 at 174.095 kb on + strand, within GFF145 at 174.193 kb on + strand, within GFF145 at 174.194 kb on - strand, within GFF145 at 174.194 kb on - strand, within GFF145 at 174.459 kb on - strand, within GFF145 at 174.518 kb on + strand, within GFF145 at 174.518 kb on + strand, within GFF145 at 174.519 kb on - strand, within GFF145 at 174.519 kb on - strand, within GFF145
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 171,583 + -0.4 172,160 + GFF143 0.70 -0.2 172,160 + GFF143 0.70 -0.0 172,161 - GFF143 0.70 +0.9 172,798 + GFF144 0.33 +1.3 172,798 + GFF144 0.33 +0.9 172,798 + GFF144 0.33 -0.3 172,799 - GFF144 0.34 +0.3 172,822 + GFF144 0.35 +0.6 172,822 + GFF144 0.35 -0.3 173,037 + GFF144 0.53 +0.5 173,037 + GFF144 0.53 -0.2 173,038 - GFF144 0.53 +1.3 173,038 - GFF144 0.53 -0.6 173,038 - GFF144 0.53 -0.2 173,140 + GFF144 0.61 +1.9 173,262 - GFF144 0.71 +0.4 173,263 + GFF144 0.71 -0.6 173,263 + GFF144 0.71 +0.1 173,264 - GFF144 0.71 -0.5 173,264 - GFF144 0.71 +0.8 173,264 - GFF144 0.71 +0.2 173,264 - GFF144 0.71 -0.8 173,264 - GFF144 0.71 -0.0 173,455 + GFF144 0.87 +0.1 173,455 + GFF144 0.87 -0.6 173,717 + -0.5 173,717 + -0.1 173,717 + -0.2 173,718 - -0.5 173,732 + +0.3 173,732 + -0.7 173,732 + +1.0 173,733 - +0.4 173,733 - -0.2 173,733 - -0.3 173,733 - +0.3 174,003 - GFF145 0.29 +1.3 174,003 - GFF145 0.29 -0.9 174,003 - GFF145 0.29 -0.1 174,003 - GFF145 0.29 -0.0 174,056 + GFF145 0.33 -0.3 174,056 + GFF145 0.33 -0.3 174,056 + GFF145 0.33 -0.7 174,056 + GFF145 0.33 -0.7 174,056 + GFF145 0.33 -0.0 174,057 - GFF145 0.33 -0.5 174,057 - GFF145 0.33 +0.3 174,057 - GFF145 0.33 -0.0 174,057 - GFF145 0.33 -0.3 174,057 - GFF145 0.33 +0.2 174,095 + GFF145 0.36 -0.2 174,095 + GFF145 0.36 -0.5 174,095 + GFF145 0.36 -0.4 174,193 + GFF145 0.43 -0.2 174,194 - GFF145 0.43 -0.2 174,194 - GFF145 0.43 +0.0 174,459 - GFF145 0.62 +0.9 174,518 + GFF145 0.66 +0.5 174,518 + GFF145 0.66 -0.7 174,519 - GFF145 0.66 +0.1 174,519 - GFF145 0.66 +0.4
Or see this region's nucleotide sequence