Strain Fitness in Variovorax sp. SCN45 around GFF1402

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1401 and GFF1402 are separated by 99 nucleotidesGFF1402 and GFF1403 are separated by 31 nucleotides GFF1401 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 750,083 to 751,447 GFF1401 GFF1402 - 3-demethylubiquinone-9 3-methyltransferase, at 751,547 to 752,023 GFF1402 GFF1403 - MATE efflux family protein, at 752,055 to 753,473 GFF1403 Position (kb) 751 752 753Strain fitness (log2 ratio) -2 -1 0 1 2at 750.621 kb on + strand, within GFF1401at 750.675 kb on + strand, within GFF1401at 750.676 kb on - strand, within GFF1401at 750.676 kb on - strand, within GFF1401at 750.678 kb on + strand, within GFF1401at 750.678 kb on + strand, within GFF1401at 750.678 kb on + strand, within GFF1401at 750.696 kb on + strand, within GFF1401at 750.696 kb on + strand, within GFF1401at 750.696 kb on + strand, within GFF1401at 750.697 kb on - strand, within GFF1401at 750.855 kb on + strand, within GFF1401at 750.855 kb on + strand, within GFF1401at 750.856 kb on - strand, within GFF1401at 750.856 kb on - strand, within GFF1401at 750.917 kb on - strand, within GFF1401at 750.981 kb on + strand, within GFF1401at 750.991 kb on - strand, within GFF1401at 750.991 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.122 kb on + strand, within GFF1401at 751.122 kb on + strand, within GFF1401at 751.123 kb on - strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.225 kb on - strand, within GFF1401at 751.225 kb on - strand, within GFF1401at 751.569 kb on + strandat 751.569 kb on + strandat 751.570 kb on - strandat 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.608 kb on - strand, within GFF1402at 751.748 kb on + strand, within GFF1402at 751.748 kb on + strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.775 kb on + strand, within GFF1402at 751.775 kb on + strand, within GFF1402at 751.776 kb on - strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 752.009 kb on + strandat 752.010 kb on - strandat 752.010 kb on - strandat 752.056 kb on + strandat 752.057 kb on - strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.101 kb on + strandat 752.102 kb on - strandat 752.102 kb on - strandat 752.102 kb on - strandat 752.188 kb on + strandat 752.188 kb on + strandat 752.188 kb on + strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.398 kb on + strand, within GFF1403at 752.399 kb on - strand, within GFF1403at 752.399 kb on - strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.579 kb on - strand, within GFF1403at 752.603 kb on - strand, within GFF1403at 752.603 kb on - strand, within GFF1403at 752.603 kb on - strand, within GFF1403at 753.013 kb on + strand, within GFF1403

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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750,621 + GFF1401 0.39 -1.4
750,675 + GFF1401 0.43 +0.5
750,676 - GFF1401 0.43 +0.1
750,676 - GFF1401 0.43 -0.9
750,678 + GFF1401 0.44 -0.2
750,678 + GFF1401 0.44 -0.5
750,678 + GFF1401 0.44 -0.5
750,696 + GFF1401 0.45 +0.1
750,696 + GFF1401 0.45 +0.2
750,696 + GFF1401 0.45 +0.8
750,697 - GFF1401 0.45 -1.9
750,855 + GFF1401 0.57 -0.6
750,855 + GFF1401 0.57 +0.7
750,856 - GFF1401 0.57 -0.7
750,856 - GFF1401 0.57 -0.6
750,917 - GFF1401 0.61 -0.5
750,981 + GFF1401 0.66 +0.2
750,991 - GFF1401 0.67 +0.1
750,991 - GFF1401 0.67 +0.1
751,033 - GFF1401 0.70 -0.2
751,033 - GFF1401 0.70 -1.3
751,033 - GFF1401 0.70 -0.3
751,033 - GFF1401 0.70 -1.5
751,122 + GFF1401 0.76 +0.4
751,122 + GFF1401 0.76 +0.8
751,123 - GFF1401 0.76 +0.4
751,224 + GFF1401 0.84 -0.6
751,224 + GFF1401 0.84 -0.9
751,224 + GFF1401 0.84 +1.0
751,224 + GFF1401 0.84 -0.5
751,224 + GFF1401 0.84 -0.4
751,224 + GFF1401 0.84 +0.1
751,224 + GFF1401 0.84 -0.5
751,225 - GFF1401 0.84 +0.8
751,225 - GFF1401 0.84 +0.1
751,569 + -0.1
751,569 + +0.1
751,570 - +0.8
751,607 + GFF1402 0.13 -0.1
751,607 + GFF1402 0.13 -0.6
751,607 + GFF1402 0.13 +0.4
751,607 + GFF1402 0.13 +0.3
751,607 + GFF1402 0.13 -0.4
751,608 - GFF1402 0.13 -0.1
751,748 + GFF1402 0.42 -1.4
751,748 + GFF1402 0.42 +0.3
751,749 - GFF1402 0.42 +0.4
751,749 - GFF1402 0.42 -0.6
751,749 - GFF1402 0.42 -1.3
751,749 - GFF1402 0.42 -0.2
751,749 - GFF1402 0.42 +1.4
751,775 + GFF1402 0.48 +1.4
751,775 + GFF1402 0.48 +1.1
751,776 - GFF1402 0.48 -1.2
751,811 + GFF1402 0.55 -0.2
751,811 + GFF1402 0.55 -0.0
751,811 + GFF1402 0.55 +0.0
752,009 + -0.1
752,010 - -1.6
752,010 - +0.2
752,056 + -1.3
752,057 - -0.3
752,098 + +0.2
752,098 + +1.4
752,098 + -0.5
752,098 + +0.9
752,101 + -0.5
752,102 - -0.3
752,102 - +0.5
752,102 - +2.1
752,188 + -0.4
752,188 + -1.8
752,188 + -0.1
752,189 - -0.9
752,189 - -1.3
752,189 - -1.0
752,189 - -1.4
752,398 + GFF1403 0.24 +0.4
752,399 - GFF1403 0.24 +0.3
752,399 - GFF1403 0.24 +1.4
752,551 + GFF1403 0.35 -0.1
752,551 + GFF1403 0.35 +0.1
752,551 + GFF1403 0.35 +0.1
752,551 + GFF1403 0.35 +0.6
752,552 - GFF1403 0.35 -0.0
752,552 - GFF1403 0.35 -0.4
752,552 - GFF1403 0.35 -0.1
752,552 - GFF1403 0.35 +0.1
752,579 - GFF1403 0.37 +0.2
752,603 - GFF1403 0.39 +0.1
752,603 - GFF1403 0.39 -0.5
752,603 - GFF1403 0.39 +0.8
753,013 + GFF1403 0.68 -0.5

Or see this region's nucleotide sequence