Strain Fitness in Variovorax sp. SCN45 around GFF1401

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1399 and GFF1400 are separated by 39 nucleotidesGFF1400 and GFF1401 are separated by 103 nucleotidesGFF1401 and GFF1402 are separated by 99 nucleotidesGFF1402 and GFF1403 are separated by 31 nucleotides GFF1399 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 748,117 to 749,118 GFF1399 GFF1400 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 749,158 to 749,979 GFF1400 GFF1401 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 750,083 to 751,447 GFF1401 GFF1402 - 3-demethylubiquinone-9 3-methyltransferase, at 751,547 to 752,023 GFF1402 GFF1403 - MATE efflux family protein, at 752,055 to 753,473 GFF1403 Position (kb) 750 751 752Strain fitness (log2 ratio) -2 -1 0 1 2at 749.182 kb on + strandat 749.182 kb on + strandat 749.183 kb on - strandat 749.213 kb on + strandat 749.213 kb on + strandat 749.213 kb on + strandat 749.213 kb on + strandat 749.214 kb on - strandat 749.214 kb on - strandat 749.214 kb on - strandat 749.215 kb on + strandat 749.215 kb on + strandat 749.215 kb on + strandat 749.215 kb on + strandat 749.216 kb on - strandat 749.216 kb on - strandat 749.216 kb on - strandat 749.216 kb on - strandat 749.216 kb on - strandat 749.282 kb on - strand, within GFF1400at 749.482 kb on + strand, within GFF1400at 749.482 kb on + strand, within GFF1400at 749.483 kb on - strand, within GFF1400at 749.483 kb on - strand, within GFF1400at 749.746 kb on + strand, within GFF1400at 749.894 kb on - strand, within GFF1400at 749.894 kb on - strand, within GFF1400at 749.968 kb on + strandat 749.978 kb on - strandat 749.978 kb on - strandat 750.084 kb on + strandat 750.084 kb on + strandat 750.084 kb on + strandat 750.084 kb on + strandat 750.216 kb on + strandat 750.216 kb on + strandat 750.216 kb on + strandat 750.216 kb on + strandat 750.216 kb on + strandat 750.216 kb on + strandat 750.216 kb on + strandat 750.216 kb on + strandat 750.217 kb on - strandat 750.217 kb on - strandat 750.217 kb on - strandat 750.217 kb on - strandat 750.217 kb on - strandat 750.315 kb on + strand, within GFF1401at 750.504 kb on + strand, within GFF1401at 750.504 kb on + strand, within GFF1401at 750.504 kb on + strand, within GFF1401at 750.621 kb on + strand, within GFF1401at 750.675 kb on + strand, within GFF1401at 750.676 kb on - strand, within GFF1401at 750.676 kb on - strand, within GFF1401at 750.678 kb on + strand, within GFF1401at 750.678 kb on + strand, within GFF1401at 750.678 kb on + strand, within GFF1401at 750.696 kb on + strand, within GFF1401at 750.696 kb on + strand, within GFF1401at 750.696 kb on + strand, within GFF1401at 750.697 kb on - strand, within GFF1401at 750.855 kb on + strand, within GFF1401at 750.855 kb on + strand, within GFF1401at 750.856 kb on - strand, within GFF1401at 750.856 kb on - strand, within GFF1401at 750.917 kb on - strand, within GFF1401at 750.981 kb on + strand, within GFF1401at 750.991 kb on - strand, within GFF1401at 750.991 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.033 kb on - strand, within GFF1401at 751.122 kb on + strand, within GFF1401at 751.122 kb on + strand, within GFF1401at 751.123 kb on - strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.225 kb on - strand, within GFF1401at 751.225 kb on - strand, within GFF1401at 751.569 kb on + strandat 751.569 kb on + strandat 751.570 kb on - strandat 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.608 kb on - strand, within GFF1402at 751.748 kb on + strand, within GFF1402at 751.748 kb on + strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.775 kb on + strand, within GFF1402at 751.775 kb on + strand, within GFF1402at 751.776 kb on - strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 752.009 kb on + strandat 752.010 kb on - strandat 752.010 kb on - strandat 752.056 kb on + strandat 752.057 kb on - strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.101 kb on + strandat 752.102 kb on - strandat 752.102 kb on - strandat 752.102 kb on - strandat 752.188 kb on + strandat 752.188 kb on + strandat 752.188 kb on + strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.398 kb on + strand, within GFF1403at 752.399 kb on - strand, within GFF1403at 752.399 kb on - strand, within GFF1403

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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749,182 + -0.6
749,182 + +0.3
749,183 - +1.1
749,213 + -0.8
749,213 + +0.3
749,213 + -0.1
749,213 + -0.3
749,214 - +0.2
749,214 - -0.3
749,214 - -0.5
749,215 + -1.2
749,215 + -1.1
749,215 + -0.6
749,215 + +0.6
749,216 - -0.9
749,216 - -0.8
749,216 - +0.1
749,216 - +0.5
749,216 - -0.4
749,282 - GFF1400 0.15 -0.3
749,482 + GFF1400 0.39 -0.2
749,482 + GFF1400 0.39 -0.2
749,483 - GFF1400 0.40 -1.5
749,483 - GFF1400 0.40 -1.4
749,746 + GFF1400 0.72 -0.2
749,894 - GFF1400 0.90 -0.9
749,894 - GFF1400 0.90 +0.4
749,968 + -0.8
749,978 - -0.3
749,978 - -0.4
750,084 + -1.2
750,084 + +0.7
750,084 + +0.2
750,084 + +0.1
750,216 + +2.4
750,216 + +0.4
750,216 + -0.4
750,216 + -0.9
750,216 + -0.3
750,216 + +1.9
750,216 + -1.6
750,216 + +0.2
750,217 - -0.9
750,217 - +1.0
750,217 - -0.2
750,217 - -0.5
750,217 - +0.5
750,315 + GFF1401 0.17 -1.0
750,504 + GFF1401 0.31 -1.2
750,504 + GFF1401 0.31 +0.2
750,504 + GFF1401 0.31 -0.6
750,621 + GFF1401 0.39 -1.4
750,675 + GFF1401 0.43 +0.5
750,676 - GFF1401 0.43 +0.1
750,676 - GFF1401 0.43 -0.9
750,678 + GFF1401 0.44 -0.2
750,678 + GFF1401 0.44 -0.5
750,678 + GFF1401 0.44 -0.5
750,696 + GFF1401 0.45 +0.1
750,696 + GFF1401 0.45 +0.2
750,696 + GFF1401 0.45 +0.8
750,697 - GFF1401 0.45 -1.9
750,855 + GFF1401 0.57 -0.6
750,855 + GFF1401 0.57 +0.7
750,856 - GFF1401 0.57 -0.7
750,856 - GFF1401 0.57 -0.6
750,917 - GFF1401 0.61 -0.5
750,981 + GFF1401 0.66 +0.2
750,991 - GFF1401 0.67 +0.1
750,991 - GFF1401 0.67 +0.1
751,033 - GFF1401 0.70 -0.2
751,033 - GFF1401 0.70 -1.3
751,033 - GFF1401 0.70 -0.3
751,033 - GFF1401 0.70 -1.5
751,122 + GFF1401 0.76 +0.4
751,122 + GFF1401 0.76 +0.8
751,123 - GFF1401 0.76 +0.4
751,224 + GFF1401 0.84 -0.6
751,224 + GFF1401 0.84 -0.9
751,224 + GFF1401 0.84 +1.0
751,224 + GFF1401 0.84 -0.5
751,224 + GFF1401 0.84 -0.4
751,224 + GFF1401 0.84 +0.1
751,224 + GFF1401 0.84 -0.5
751,225 - GFF1401 0.84 +0.8
751,225 - GFF1401 0.84 +0.1
751,569 + -0.1
751,569 + +0.1
751,570 - +0.8
751,607 + GFF1402 0.13 -0.1
751,607 + GFF1402 0.13 -0.6
751,607 + GFF1402 0.13 +0.4
751,607 + GFF1402 0.13 +0.3
751,607 + GFF1402 0.13 -0.4
751,608 - GFF1402 0.13 -0.1
751,748 + GFF1402 0.42 -1.4
751,748 + GFF1402 0.42 +0.3
751,749 - GFF1402 0.42 +0.4
751,749 - GFF1402 0.42 -0.6
751,749 - GFF1402 0.42 -1.3
751,749 - GFF1402 0.42 -0.2
751,749 - GFF1402 0.42 +1.4
751,775 + GFF1402 0.48 +1.4
751,775 + GFF1402 0.48 +1.1
751,776 - GFF1402 0.48 -1.2
751,811 + GFF1402 0.55 -0.2
751,811 + GFF1402 0.55 -0.0
751,811 + GFF1402 0.55 +0.0
752,009 + -0.1
752,010 - -1.6
752,010 - +0.2
752,056 + -1.3
752,057 - -0.3
752,098 + +0.2
752,098 + +1.4
752,098 + -0.5
752,098 + +0.9
752,101 + -0.5
752,102 - -0.3
752,102 - +0.5
752,102 - +2.1
752,188 + -0.4
752,188 + -1.8
752,188 + -0.1
752,189 - -0.9
752,189 - -1.3
752,189 - -1.0
752,189 - -1.4
752,398 + GFF1403 0.24 +0.4
752,399 - GFF1403 0.24 +0.3
752,399 - GFF1403 0.24 +1.4

Or see this region's nucleotide sequence