Strain Fitness in Variovorax sp. SCN45 around GFF1358

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1356 and GFF1357 are separated by 172 nucleotidesGFF1357 and GFF1358 are separated by 28 nucleotidesGFF1358 and GFF1359 are separated by 104 nucleotidesGFF1359 and GFF1360 are separated by 14 nucleotides GFF1356 - Putative manganese efflux pump MntP, at 699,588 to 700,157 GFF1356 GFF1357 - no description, at 700,330 to 700,533 GFF1357 GFF1358 - Transcriptional regulator, LysR family, at 700,562 to 701,557 GFF1358 GFF1359 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 701,662 to 702,348 GFF1359 GFF1360 - 3-demethylubiquinol 3-O-methyltransferase (EC 2.1.1.64) @ 2-polyprenyl-6-hydroxyphenyl methylase (EC 2.1.1.222), at 702,363 to 703,067 GFF1360 Position (kb) 700 701 702Strain fitness (log2 ratio) -2 -1 0 1 2at 699.578 kb on + strandat 699.579 kb on - strandat 699.579 kb on - strandat 699.579 kb on - strandat 699.777 kb on + strand, within GFF1356at 699.777 kb on + strand, within GFF1356at 699.778 kb on - strand, within GFF1356at 699.778 kb on - strand, within GFF1356at 700.131 kb on + strandat 700.131 kb on + strandat 700.131 kb on + strandat 700.132 kb on - strandat 700.132 kb on - strandat 700.274 kb on + strandat 700.285 kb on + strandat 700.289 kb on + strandat 700.289 kb on + strandat 700.289 kb on + strandat 700.290 kb on - strandat 700.290 kb on - strandat 700.290 kb on - strandat 700.296 kb on + strandat 700.296 kb on + strandat 700.296 kb on + strandat 700.296 kb on + strandat 700.296 kb on + strandat 700.296 kb on + strandat 700.296 kb on + strandat 700.297 kb on - strandat 700.297 kb on - strandat 700.299 kb on + strandat 700.299 kb on + strandat 700.299 kb on + strandat 700.299 kb on + strandat 700.299 kb on + strandat 700.299 kb on + strandat 700.300 kb on - strandat 700.300 kb on - strandat 700.300 kb on - strandat 700.310 kb on + strandat 700.311 kb on - strandat 700.311 kb on - strandat 700.311 kb on - strandat 700.339 kb on + strandat 700.339 kb on + strandat 700.339 kb on + strandat 700.411 kb on + strand, within GFF1357at 700.411 kb on + strand, within GFF1357at 700.411 kb on + strand, within GFF1357at 700.411 kb on + strand, within GFF1357at 700.411 kb on + strand, within GFF1357at 700.412 kb on - strand, within GFF1357at 700.412 kb on - strand, within GFF1357at 700.412 kb on - strand, within GFF1357at 700.412 kb on - strand, within GFF1357at 700.412 kb on - strand, within GFF1357at 700.412 kb on - strand, within GFF1357at 700.413 kb on + strand, within GFF1357at 700.413 kb on + strand, within GFF1357at 700.413 kb on + strand, within GFF1357at 700.413 kb on + strand, within GFF1357at 700.414 kb on - strand, within GFF1357at 700.495 kb on + strand, within GFF1357at 700.495 kb on + strand, within GFF1357at 700.495 kb on + strand, within GFF1357at 700.495 kb on + strand, within GFF1357at 700.495 kb on + strand, within GFF1357at 700.496 kb on - strand, within GFF1357at 700.496 kb on - strand, within GFF1357at 700.496 kb on - strand, within GFF1357at 700.496 kb on - strand, within GFF1357at 700.496 kb on - strand, within GFF1357at 700.502 kb on + strand, within GFF1357at 700.716 kb on + strand, within GFF1358at 700.716 kb on + strand, within GFF1358at 700.716 kb on + strand, within GFF1358at 700.716 kb on + strand, within GFF1358at 700.716 kb on + strand, within GFF1358at 700.717 kb on - strand, within GFF1358at 700.717 kb on - strand, within GFF1358at 700.717 kb on - strand, within GFF1358at 700.717 kb on - strand, within GFF1358at 701.037 kb on + strand, within GFF1358at 701.038 kb on - strand, within GFF1358at 701.137 kb on + strand, within GFF1358at 701.600 kb on - strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.644 kb on - strandat 701.644 kb on - strandat 701.682 kb on + strandat 701.683 kb on - strandat 701.683 kb on - strandat 701.803 kb on + strand, within GFF1359at 701.804 kb on - strand, within GFF1359at 701.804 kb on - strand, within GFF1359at 701.974 kb on + strand, within GFF1359at 701.974 kb on + strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 702.116 kb on + strand, within GFF1359at 702.116 kb on + strand, within GFF1359at 702.117 kb on - strand, within GFF1359at 702.117 kb on - strand, within GFF1359at 702.117 kb on - strand, within GFF1359at 702.139 kb on + strand, within GFF1359at 702.140 kb on - strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.391 kb on + strandat 702.392 kb on - strandat 702.442 kb on + strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.526 kb on + strand, within GFF1360at 702.526 kb on + strand, within GFF1360at 702.526 kb on + strand, within GFF1360at 702.526 kb on + strand, within GFF1360

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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699,578 + +0.2
699,579 - -0.8
699,579 - -0.3
699,579 - -2.1
699,777 + GFF1356 0.33 -1.4
699,777 + GFF1356 0.33 -1.0
699,778 - GFF1356 0.33 +0.5
699,778 - GFF1356 0.33 -1.6
700,131 + +0.8
700,131 + -0.4
700,131 + -0.4
700,132 - -0.3
700,132 - -1.2
700,274 + +0.7
700,285 + +0.8
700,289 + +0.6
700,289 + +1.2
700,289 + +0.0
700,290 - -0.1
700,290 - -1.6
700,290 - -1.8
700,296 + -1.0
700,296 + +0.0
700,296 + +0.5
700,296 + -0.6
700,296 + +1.0
700,296 + -0.6
700,296 + +2.0
700,297 - -0.1
700,297 - +0.4
700,299 + +0.2
700,299 + -0.6
700,299 + -0.3
700,299 + +0.4
700,299 + -0.1
700,299 + -0.4
700,300 - +0.7
700,300 - +0.1
700,300 - -2.0
700,310 + +0.7
700,311 - -0.4
700,311 - +0.1
700,311 - -0.5
700,339 + -1.2
700,339 + +0.2
700,339 + +0.1
700,411 + GFF1357 0.40 +0.1
700,411 + GFF1357 0.40 +0.1
700,411 + GFF1357 0.40 -0.4
700,411 + GFF1357 0.40 +0.1
700,411 + GFF1357 0.40 +0.0
700,412 - GFF1357 0.40 -0.2
700,412 - GFF1357 0.40 -0.8
700,412 - GFF1357 0.40 -0.3
700,412 - GFF1357 0.40 +0.4
700,412 - GFF1357 0.40 +0.8
700,412 - GFF1357 0.40 -0.1
700,413 + GFF1357 0.41 -0.4
700,413 + GFF1357 0.41 -0.4
700,413 + GFF1357 0.41 -0.4
700,413 + GFF1357 0.41 -0.5
700,414 - GFF1357 0.41 -0.3
700,495 + GFF1357 0.81 -0.2
700,495 + GFF1357 0.81 +1.1
700,495 + GFF1357 0.81 -0.2
700,495 + GFF1357 0.81 -0.0
700,495 + GFF1357 0.81 -0.6
700,496 - GFF1357 0.81 -0.9
700,496 - GFF1357 0.81 +1.2
700,496 - GFF1357 0.81 +0.9
700,496 - GFF1357 0.81 +0.1
700,496 - GFF1357 0.81 -0.5
700,502 + GFF1357 0.84 -0.1
700,716 + GFF1358 0.15 +0.5
700,716 + GFF1358 0.15 -0.3
700,716 + GFF1358 0.15 +0.2
700,716 + GFF1358 0.15 +1.0
700,716 + GFF1358 0.15 +0.4
700,717 - GFF1358 0.16 +1.2
700,717 - GFF1358 0.16 -0.3
700,717 - GFF1358 0.16 +1.8
700,717 - GFF1358 0.16 +0.1
701,037 + GFF1358 0.48 -0.2
701,038 - GFF1358 0.48 -0.3
701,137 + GFF1358 0.58 -0.7
701,600 - +0.7
701,643 + -1.2
701,643 + -0.4
701,643 + +0.0
701,643 + -0.1
701,643 + -0.3
701,643 + -0.1
701,644 - +0.9
701,644 - +0.3
701,682 + -0.1
701,683 - +0.2
701,683 - +0.4
701,803 + GFF1359 0.21 +0.1
701,804 - GFF1359 0.21 -0.2
701,804 - GFF1359 0.21 -0.2
701,974 + GFF1359 0.45 -0.2
701,974 + GFF1359 0.45 +0.2
701,975 - GFF1359 0.46 +1.0
701,975 - GFF1359 0.46 -0.1
701,975 - GFF1359 0.46 +2.4
701,975 - GFF1359 0.46 +0.1
701,975 - GFF1359 0.46 +2.7
702,116 + GFF1359 0.66 +0.1
702,116 + GFF1359 0.66 -1.5
702,117 - GFF1359 0.66 -1.2
702,117 - GFF1359 0.66 +0.2
702,117 - GFF1359 0.66 +0.5
702,139 + GFF1359 0.69 -0.7
702,140 - GFF1359 0.70 -0.5
702,205 + GFF1359 0.79 -0.1
702,205 + GFF1359 0.79 -0.3
702,205 + GFF1359 0.79 -1.1
702,205 + GFF1359 0.79 -0.4
702,205 + GFF1359 0.79 +0.2
702,391 + -0.8
702,392 - +0.1
702,442 + GFF1360 0.11 -0.5
702,443 - GFF1360 0.11 -0.2
702,443 - GFF1360 0.11 +0.4
702,443 - GFF1360 0.11 -0.1
702,443 - GFF1360 0.11 -0.5
702,443 - GFF1360 0.11 -0.2
702,443 - GFF1360 0.11 -0.6
702,443 - GFF1360 0.11 -0.5
702,526 + GFF1360 0.23 +0.2
702,526 + GFF1360 0.23 -0.3
702,526 + GFF1360 0.23 +0.7
702,526 + GFF1360 0.23 -0.7

Or see this region's nucleotide sequence