Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF132 and GFF133 are separated by 35 nucleotides GFF133 and GFF134 overlap by 4 nucleotides GFF134 and GFF135 are separated by 142 nucleotides GFF135 and GFF136 are separated by 10 nucleotides
GFF132 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 160,488 to 161,459
GFF132
GFF133 - Ferredoxin, at 161,495 to 161,824
GFF133
GFF134 - putative oxidoreductase (AsfA-like), putative L-aspartate oxidase( EC:1.4.3.16 ), at 161,821 to 163,443
GFF134
GFF135 - no description, at 163,586 to 164,020
GFF135
GFF136 - Uncharacterized MFS-type transporter, at 164,031 to 165,458
GFF136
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.996 kb on + strand, within GFF132 at 160.996 kb on + strand, within GFF132 at 160.997 kb on - strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.009 kb on - strand, within GFF132 at 161.009 kb on - strand, within GFF132 at 161.170 kb on + strand, within GFF132 at 161.170 kb on + strand, within GFF132 at 161.580 kb on + strand, within GFF133 at 161.581 kb on - strand, within GFF133 at 161.655 kb on + strand, within GFF133 at 161.676 kb on + strand, within GFF133 at 161.676 kb on + strand, within GFF133 at 161.972 kb on + strand at 161.973 kb on - strand at 162.389 kb on + strand, within GFF134 at 162.680 kb on + strand, within GFF134 at 162.681 kb on - strand, within GFF134 at 163.031 kb on + strand, within GFF134 at 163.032 kb on - strand, within GFF134 at 163.032 kb on - strand, within GFF134 at 163.479 kb on + strand at 163.480 kb on - strand at 163.524 kb on + strand at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.697 kb on + strand, within GFF135 at 163.698 kb on - strand, within GFF135 at 163.698 kb on - strand, within GFF135 at 163.754 kb on + strand, within GFF135 at 163.754 kb on + strand, within GFF135 at 163.755 kb on - strand, within GFF135 at 163.755 kb on - strand, within GFF135 at 163.919 kb on + strand, within GFF135 at 163.919 kb on + strand, within GFF135 at 163.919 kb on + strand, within GFF135 at 163.934 kb on + strand, within GFF135 at 163.943 kb on + strand, within GFF135 at 163.976 kb on + strand, within GFF135 at 163.976 kb on + strand, within GFF135 at 163.976 kb on + strand, within GFF135 at 163.977 kb on - strand at 164.032 kb on + strand at 164.032 kb on + strand at 164.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 160,996 + GFF132 0.52 -0.4 160,996 + GFF132 0.52 +0.3 160,997 - GFF132 0.52 +0.0 161,008 + GFF132 0.53 +0.7 161,008 + GFF132 0.53 -0.3 161,008 + GFF132 0.53 +0.3 161,009 - GFF132 0.54 -0.9 161,009 - GFF132 0.54 -0.3 161,170 + GFF132 0.70 +1.9 161,170 + GFF132 0.70 -1.1 161,580 + GFF133 0.26 -0.2 161,581 - GFF133 0.26 +0.8 161,655 + GFF133 0.48 -0.1 161,676 + GFF133 0.55 -0.9 161,676 + GFF133 0.55 +0.2 161,972 + -0.4 161,973 - +0.1 162,389 + GFF134 0.35 -0.3 162,680 + GFF134 0.53 -1.0 162,681 - GFF134 0.53 -0.3 163,031 + GFF134 0.75 -0.6 163,032 - GFF134 0.75 +0.0 163,032 - GFF134 0.75 -1.3 163,479 + -0.4 163,480 - -0.7 163,524 + -1.2 163,697 + GFF135 0.26 -0.5 163,697 + GFF135 0.26 +0.3 163,697 + GFF135 0.26 +0.6 163,697 + GFF135 0.26 -0.3 163,697 + GFF135 0.26 +0.2 163,697 + GFF135 0.26 +0.3 163,697 + GFF135 0.26 +2.6 163,698 - GFF135 0.26 -0.7 163,698 - GFF135 0.26 +0.0 163,754 + GFF135 0.39 -0.3 163,754 + GFF135 0.39 -0.5 163,755 - GFF135 0.39 +1.9 163,755 - GFF135 0.39 -0.3 163,919 + GFF135 0.77 -0.4 163,919 + GFF135 0.77 -0.3 163,919 + GFF135 0.77 -0.1 163,934 + GFF135 0.80 -0.9 163,943 + GFF135 0.82 -0.3 163,976 + GFF135 0.90 -0.3 163,976 + GFF135 0.90 -0.3 163,976 + GFF135 0.90 -2.0 163,977 - -0.8 164,032 + +0.3 164,032 + -1.3 164,033 - -0.5
Or see this region's nucleotide sequence