Strain Fitness in Variovorax sp. SCN45 around GFF1288

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1287 and GFF1288 are separated by 0 nucleotidesGFF1288 and GFF1289 are separated by 1 nucleotidesGFF1289 and GFF1290 are separated by 19 nucleotides GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309 GFF1287 GFF1288 - Sulfate transport system permease protein CysT, at 615,310 to 616,197 GFF1288 GFF1289 - Sulfate transport system permease protein CysW, at 616,199 to 617,101 GFF1289 GFF1290 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 617,121 to 618,218 GFF1290 Position (kb) 615 616 617Strain fitness (log2 ratio) -1 0 1 2at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.420 kb on - strand, within GFF1287at 614.428 kb on + strand, within GFF1287at 614.428 kb on + strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.452 kb on + strand, within GFF1287at 614.452 kb on + strand, within GFF1287at 614.453 kb on - strand, within GFF1287at 614.453 kb on - strand, within GFF1287at 614.453 kb on - strand, within GFF1287at 614.773 kb on + strand, within GFF1287at 614.773 kb on + strand, within GFF1287at 614.774 kb on - strand, within GFF1287at 614.779 kb on + strand, within GFF1287at 614.780 kb on - strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.797 kb on + strand, within GFF1287at 614.798 kb on - strand, within GFF1287at 614.798 kb on - strand, within GFF1287at 614.798 kb on - strand, within GFF1287at 614.798 kb on - strand, within GFF1287at 614.865 kb on - strand, within GFF1287at 614.865 kb on - strand, within GFF1287at 614.961 kb on + strand, within GFF1287at 614.961 kb on + strand, within GFF1287at 614.962 kb on - strand, within GFF1287at 615.091 kb on + strand, within GFF1287at 615.091 kb on + strand, within GFF1287at 615.091 kb on + strand, within GFF1287at 615.091 kb on + strand, within GFF1287at 615.092 kb on - strand, within GFF1287at 615.092 kb on - strand, within GFF1287at 615.092 kb on - strand, within GFF1287at 615.106 kb on + strand, within GFF1287at 615.107 kb on - strand, within GFF1287at 615.107 kb on - strand, within GFF1287at 615.107 kb on - strand, within GFF1287at 615.107 kb on - strand, within GFF1287at 615.107 kb on - strand, within GFF1287at 615.178 kb on + strand, within GFF1287at 615.289 kb on + strandat 615.289 kb on + strandat 615.289 kb on + strandat 615.289 kb on + strandat 615.290 kb on - strandat 615.290 kb on - strandat 615.290 kb on - strandat 615.290 kb on - strandat 615.290 kb on - strandat 615.291 kb on + strandat 615.291 kb on + strandat 615.307 kb on + strandat 615.307 kb on + strandat 615.433 kb on + strand, within GFF1288at 615.545 kb on - strand, within GFF1288at 615.628 kb on + strand, within GFF1288at 615.628 kb on + strand, within GFF1288at 615.629 kb on - strand, within GFF1288at 615.629 kb on - strand, within GFF1288at 616.000 kb on + strand, within GFF1288at 616.084 kb on + strand, within GFF1288at 616.084 kb on + strand, within GFF1288at 616.085 kb on - strand, within GFF1288at 616.090 kb on + strand, within GFF1288at 616.090 kb on + strand, within GFF1288at 616.091 kb on - strand, within GFF1288at 616.365 kb on - strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.568 kb on + strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.569 kb on - strand, within GFF1289at 616.821 kb on - strand, within GFF1289at 616.821 kb on - strand, within GFF1289at 616.935 kb on - strand, within GFF1289at 616.935 kb on - strand, within GFF1289at 616.943 kb on + strand, within GFF1289at 616.944 kb on - strand, within GFF1289at 616.944 kb on - strand, within GFF1289at 616.944 kb on - strand, within GFF1289

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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614,398 + GFF1287 0.10 +0.1
614,398 + GFF1287 0.10 -0.1
614,398 + GFF1287 0.10 +0.7
614,398 + GFF1287 0.10 -1.4
614,420 - GFF1287 0.12 +0.2
614,428 + GFF1287 0.13 -1.3
614,428 + GFF1287 0.13 -0.2
614,429 - GFF1287 0.13 -0.2
614,429 - GFF1287 0.13 +0.1
614,429 - GFF1287 0.13 +0.7
614,452 + GFF1287 0.16 -0.6
614,452 + GFF1287 0.16 -0.6
614,453 - GFF1287 0.16 +0.0
614,453 - GFF1287 0.16 -0.5
614,453 - GFF1287 0.16 +0.1
614,773 + GFF1287 0.47 -1.2
614,773 + GFF1287 0.47 -0.0
614,774 - GFF1287 0.47 -0.4
614,779 + GFF1287 0.48 -0.7
614,780 - GFF1287 0.48 -0.0
614,797 + GFF1287 0.50 -0.3
614,797 + GFF1287 0.50 +0.4
614,797 + GFF1287 0.50 -1.0
614,797 + GFF1287 0.50 -0.1
614,797 + GFF1287 0.50 +1.0
614,797 + GFF1287 0.50 +0.2
614,797 + GFF1287 0.50 -0.3
614,797 + GFF1287 0.50 +0.1
614,798 - GFF1287 0.50 -0.4
614,798 - GFF1287 0.50 +0.9
614,798 - GFF1287 0.50 -0.6
614,798 - GFF1287 0.50 +1.4
614,865 - GFF1287 0.56 -0.2
614,865 - GFF1287 0.56 -0.7
614,961 + GFF1287 0.66 +1.0
614,961 + GFF1287 0.66 +0.4
614,962 - GFF1287 0.66 +0.6
615,091 + GFF1287 0.78 +0.4
615,091 + GFF1287 0.78 -1.6
615,091 + GFF1287 0.78 -0.1
615,091 + GFF1287 0.78 -0.4
615,092 - GFF1287 0.79 -0.5
615,092 - GFF1287 0.79 -0.9
615,092 - GFF1287 0.79 -1.5
615,106 + GFF1287 0.80 -0.6
615,107 - GFF1287 0.80 +0.0
615,107 - GFF1287 0.80 -0.3
615,107 - GFF1287 0.80 -1.2
615,107 - GFF1287 0.80 +0.3
615,107 - GFF1287 0.80 -0.1
615,178 + GFF1287 0.87 +0.5
615,289 + -0.8
615,289 + +0.8
615,289 + -0.3
615,289 + +0.2
615,290 - +0.2
615,290 - +0.3
615,290 - -0.8
615,290 - -0.7
615,290 - -0.3
615,291 + -0.2
615,291 + -0.3
615,307 + +0.2
615,307 + -0.1
615,433 + GFF1288 0.14 +0.2
615,545 - GFF1288 0.26 +0.0
615,628 + GFF1288 0.36 +0.8
615,628 + GFF1288 0.36 +0.8
615,629 - GFF1288 0.36 +0.6
615,629 - GFF1288 0.36 +0.2
616,000 + GFF1288 0.78 +0.4
616,084 + GFF1288 0.87 +0.6
616,084 + GFF1288 0.87 -0.2
616,085 - GFF1288 0.87 +0.4
616,090 + GFF1288 0.88 -0.1
616,090 + GFF1288 0.88 -1.4
616,091 - GFF1288 0.88 -0.9
616,365 - GFF1289 0.18 -0.0
616,568 + GFF1289 0.41 +1.6
616,568 + GFF1289 0.41 +0.4
616,568 + GFF1289 0.41 -0.2
616,568 + GFF1289 0.41 -0.6
616,568 + GFF1289 0.41 +0.1
616,568 + GFF1289 0.41 +0.3
616,568 + GFF1289 0.41 -0.2
616,568 + GFF1289 0.41 -0.6
616,569 - GFF1289 0.41 +0.3
616,569 - GFF1289 0.41 -1.4
616,569 - GFF1289 0.41 -0.3
616,569 - GFF1289 0.41 +0.7
616,569 - GFF1289 0.41 -0.2
616,569 - GFF1289 0.41 +0.1
616,569 - GFF1289 0.41 -0.7
616,569 - GFF1289 0.41 -0.2
616,569 - GFF1289 0.41 -0.3
616,569 - GFF1289 0.41 +1.4
616,569 - GFF1289 0.41 +0.4
616,569 - GFF1289 0.41 -0.3
616,569 - GFF1289 0.41 -0.1
616,569 - GFF1289 0.41 +1.8
616,569 - GFF1289 0.41 -0.2
616,569 - GFF1289 0.41 +0.2
616,821 - GFF1289 0.69 +1.4
616,821 - GFF1289 0.69 -1.2
616,935 - GFF1289 0.82 +0.5
616,935 - GFF1289 0.82 -0.4
616,943 + GFF1289 0.82 -0.3
616,944 - GFF1289 0.83 -0.0
616,944 - GFF1289 0.83 -0.1
616,944 - GFF1289 0.83 +0.8

Or see this region's nucleotide sequence