Strain Fitness in Variovorax sp. SCN45 around GFF1280

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1278 and GFF1279 overlap by 4 nucleotidesGFF1279 and GFF1280 are separated by 13 nucleotidesGFF1280 and GFF1281 overlap by 10 nucleotidesGFF1281 and GFF1282 are separated by 45 nucleotides GFF1278 - no description, at 608,183 to 608,305 GFF1278 GFF1279 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 608,302 to 609,135 GFF1279 GFF1280 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,149 to 609,856 GFF1280 GFF1281 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,847 to 610,578 GFF1281 GFF1282 - Chromate reductase (EC 1.6.5.2), at 610,624 to 611,178 GFF1282 Position (kb) 609 610Strain fitness (log2 ratio) -1 0 1 2at 608.155 kb on + strandat 608.155 kb on + strandat 608.155 kb on + strandat 608.155 kb on + strandat 608.156 kb on - strandat 608.156 kb on - strandat 608.156 kb on - strandat 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.266 kb on + strand, within GFF1278at 608.266 kb on + strand, within GFF1278at 608.266 kb on + strand, within GFF1278at 608.284 kb on + strand, within GFF1278at 608.284 kb on + strand, within GFF1278at 608.284 kb on + strand, within GFF1278at 608.285 kb on - strand, within GFF1278at 608.453 kb on - strand, within GFF1279at 608.659 kb on + strand, within GFF1279at 608.660 kb on - strand, within GFF1279at 608.660 kb on - strand, within GFF1279at 608.783 kb on - strand, within GFF1279at 608.783 kb on - strand, within GFF1279at 608.806 kb on + strand, within GFF1279at 608.807 kb on - strand, within GFF1279at 608.807 kb on - strand, within GFF1279at 608.807 kb on - strand, within GFF1279at 608.942 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.954 kb on - strand, within GFF1279at 609.052 kb on + strandat 609.052 kb on + strandat 609.052 kb on + strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.485 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.710 kb on + strand, within GFF1280at 609.711 kb on - strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.884 kb on - strandat 609.884 kb on - strandat 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.177 kb on + strand, within GFF1281at 610.177 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.363 kb on + strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.364 kb on - strand, within GFF1281at 610.365 kb on + strand, within GFF1281at 610.365 kb on + strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.366 kb on - strand, within GFF1281at 610.426 kb on + strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.463 kb on - strand, within GFF1281at 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.675 kb on + strandat 610.676 kb on - strandat 610.676 kb on - strandat 610.676 kb on - strandat 610.762 kb on + strand, within GFF1282at 610.762 kb on + strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.763 kb on - strand, within GFF1282at 610.763 kb on - strand, within GFF1282

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
608,155 + +0.8
608,155 + -0.8
608,155 + +0.2
608,155 + +0.4
608,156 - -0.9
608,156 - -0.3
608,156 - -0.3
608,221 + GFF1278 0.31 -1.2
608,221 + GFF1278 0.31 -0.2
608,221 + GFF1278 0.31 -0.1
608,221 + GFF1278 0.31 +0.2
608,221 + GFF1278 0.31 -0.1
608,221 + GFF1278 0.31 -1.5
608,222 - GFF1278 0.32 +1.1
608,222 - GFF1278 0.32 -0.3
608,222 - GFF1278 0.32 +0.2
608,222 - GFF1278 0.32 +0.1
608,222 - GFF1278 0.32 -0.1
608,266 + GFF1278 0.67 +0.3
608,266 + GFF1278 0.67 -0.7
608,266 + GFF1278 0.67 +0.1
608,284 + GFF1278 0.82 +0.0
608,284 + GFF1278 0.82 +0.8
608,284 + GFF1278 0.82 +0.2
608,285 - GFF1278 0.83 +1.0
608,453 - GFF1279 0.18 -0.1
608,659 + GFF1279 0.43 -0.7
608,660 - GFF1279 0.43 -0.4
608,660 - GFF1279 0.43 -0.1
608,783 - GFF1279 0.58 -1.6
608,783 - GFF1279 0.58 -0.2
608,806 + GFF1279 0.60 -0.6
608,807 - GFF1279 0.61 +0.5
608,807 - GFF1279 0.61 -0.0
608,807 - GFF1279 0.61 -0.0
608,942 + GFF1279 0.77 -0.3
608,953 + GFF1279 0.78 -0.3
608,953 + GFF1279 0.78 -0.8
608,953 + GFF1279 0.78 +1.1
608,954 - GFF1279 0.78 +0.4
609,052 + -0.8
609,052 + -0.0
609,052 + -0.1
609,053 - -0.6
609,053 - -0.1
609,053 - -0.5
609,053 - -0.3
609,329 + GFF1280 0.25 -0.0
609,329 + GFF1280 0.25 -0.6
609,329 + GFF1280 0.25 +1.3
609,329 + GFF1280 0.25 -0.4
609,329 + GFF1280 0.25 -0.6
609,329 + GFF1280 0.25 -0.5
609,330 - GFF1280 0.26 +0.5
609,330 - GFF1280 0.26 -0.7
609,330 - GFF1280 0.26 -0.6
609,330 - GFF1280 0.26 -0.0
609,330 - GFF1280 0.26 -1.2
609,330 - GFF1280 0.26 -0.1
609,330 - GFF1280 0.26 -0.7
609,380 + GFF1280 0.33 +0.0
609,380 + GFF1280 0.33 -0.1
609,380 + GFF1280 0.33 -0.7
609,428 + GFF1280 0.39 -0.6
609,428 + GFF1280 0.39 -0.6
609,428 + GFF1280 0.39 -1.1
609,428 + GFF1280 0.39 +0.7
609,429 - GFF1280 0.40 +0.2
609,429 - GFF1280 0.40 +0.3
609,429 - GFF1280 0.40 +0.0
609,429 - GFF1280 0.40 +0.4
609,429 - GFF1280 0.40 -0.3
609,485 + GFF1280 0.47 +0.7
609,497 + GFF1280 0.49 +0.5
609,497 + GFF1280 0.49 -0.3
609,497 + GFF1280 0.49 -0.2
609,497 + GFF1280 0.49 +0.2
609,497 + GFF1280 0.49 +0.1
609,497 + GFF1280 0.49 -0.0
609,497 + GFF1280 0.49 -0.1
609,497 + GFF1280 0.49 +0.2
609,498 - GFF1280 0.49 +1.6
609,498 - GFF1280 0.49 +0.7
609,498 - GFF1280 0.49 -0.7
609,498 - GFF1280 0.49 +0.3
609,498 - GFF1280 0.49 -0.2
609,650 + GFF1280 0.71 -0.2
609,650 + GFF1280 0.71 +0.2
609,650 + GFF1280 0.71 +1.2
609,650 + GFF1280 0.71 +0.3
609,650 + GFF1280 0.71 -0.4
609,650 + GFF1280 0.71 +0.3
609,650 + GFF1280 0.71 +0.2
609,650 + GFF1280 0.71 -0.9
609,651 - GFF1280 0.71 -0.3
609,651 - GFF1280 0.71 +1.4
609,651 - GFF1280 0.71 +0.7
609,651 - GFF1280 0.71 +0.7
609,651 - GFF1280 0.71 -0.2
609,651 - GFF1280 0.71 -0.6
609,651 - GFF1280 0.71 -0.5
609,710 + GFF1280 0.79 +0.5
609,711 - GFF1280 0.79 +0.7
609,779 + GFF1280 0.89 -0.5
609,779 + GFF1280 0.89 +0.3
609,779 + GFF1280 0.89 -0.1
609,780 - GFF1280 0.89 +0.4
609,780 - GFF1280 0.89 +1.2
609,780 - GFF1280 0.89 +0.6
609,780 - GFF1280 0.89 +0.2
609,884 - -0.6
609,884 - +1.0
610,093 + GFF1281 0.34 -0.2
610,093 + GFF1281 0.34 +0.6
610,093 + GFF1281 0.34 +0.2
610,093 + GFF1281 0.34 -0.2
610,093 + GFF1281 0.34 -0.5
610,093 + GFF1281 0.34 +0.2
610,094 - GFF1281 0.34 -0.0
610,094 - GFF1281 0.34 -0.4
610,094 - GFF1281 0.34 +1.0
610,177 + GFF1281 0.45 -0.1
610,177 + GFF1281 0.45 +0.4
610,363 + GFF1281 0.70 -0.3
610,363 + GFF1281 0.70 +0.3
610,363 + GFF1281 0.70 +0.3
610,363 + GFF1281 0.70 +0.0
610,363 + GFF1281 0.70 +0.1
610,363 + GFF1281 0.70 -0.0
610,363 + GFF1281 0.70 -0.1
610,363 + GFF1281 0.70 -0.4
610,364 - GFF1281 0.71 -0.3
610,364 - GFF1281 0.71 -0.6
610,364 - GFF1281 0.71 -0.1
610,364 - GFF1281 0.71 +2.2
610,364 - GFF1281 0.71 -0.4
610,365 + GFF1281 0.71 -0.9
610,365 + GFF1281 0.71 -0.6
610,366 - GFF1281 0.71 -0.4
610,366 - GFF1281 0.71 +0.4
610,366 - GFF1281 0.71 -0.9
610,426 + GFF1281 0.79 +0.3
610,463 - GFF1281 0.84 +0.4
610,463 - GFF1281 0.84 -0.6
610,463 - GFF1281 0.84 -1.4
610,463 - GFF1281 0.84 +0.4
610,463 - GFF1281 0.84 +2.0
610,675 + -1.1
610,675 + -0.1
610,675 + -0.2
610,675 + -0.4
610,675 + +0.1
610,676 - +1.4
610,676 - -0.4
610,676 - -0.5
610,762 + GFF1282 0.25 -0.7
610,762 + GFF1282 0.25 -0.5
610,763 - GFF1282 0.25 +0.8
610,763 - GFF1282 0.25 +0.7
610,763 - GFF1282 0.25 +1.7

Or see this region's nucleotide sequence