Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1263 and GFF1264 overlap by 4 nucleotides GFF1264 and GFF1265 are separated by 64 nucleotides GFF1265 and GFF1266 are separated by 66 nucleotides
GFF1263 - Serine acetyltransferase (EC 2.3.1.30), at 579,201 to 580,118
GFF1263
GFF1264 - Transcriptional regulator, Xre family, at 580,115 to 580,384
GFF1264
GFF1265 - cAMP-binding protein, at 580,449 to 581,381
GFF1265
GFF1266 - Cysteine desulfurase (EC 2.8.1.7), at 581,448 to 583,253
GFF1266
Position (kb) 580
581
582 Strain fitness (log2 ratio) -1
0
1
2 at 579.601 kb on - strand, within GFF1263 at 579.696 kb on + strand, within GFF1263 at 579.696 kb on + strand, within GFF1263 at 579.697 kb on - strand, within GFF1263 at 579.864 kb on + strand, within GFF1263 at 579.969 kb on + strand, within GFF1263 at 579.969 kb on + strand, within GFF1263 at 580.221 kb on - strand, within GFF1264 at 580.221 kb on - strand, within GFF1264 at 580.251 kb on + strand, within GFF1264 at 580.252 kb on - strand, within GFF1264 at 580.599 kb on + strand, within GFF1265 at 580.600 kb on - strand, within GFF1265 at 580.770 kb on + strand, within GFF1265 at 581.271 kb on + strand, within GFF1265 at 581.272 kb on - strand, within GFF1265 at 581.287 kb on - strand, within GFF1265 at 581.352 kb on + strand at 581.353 kb on - strand at 581.353 kb on - strand at 581.373 kb on + strand at 581.373 kb on + strand at 581.374 kb on - strand at 581.374 kb on - strand at 581.379 kb on + strand at 581.380 kb on - strand at 581.380 kb on - strand at 581.612 kb on + strand at 581.613 kb on - strand at 581.925 kb on + strand, within GFF1266 at 581.925 kb on + strand, within GFF1266
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 579,601 - GFF1263 0.44 +0.1 579,696 + GFF1263 0.54 -0.7 579,696 + GFF1263 0.54 -0.1 579,697 - GFF1263 0.54 +0.3 579,864 + GFF1263 0.72 -0.6 579,969 + GFF1263 0.84 +0.3 579,969 + GFF1263 0.84 -0.1 580,221 - GFF1264 0.39 -0.4 580,221 - GFF1264 0.39 +0.8 580,251 + GFF1264 0.50 -1.0 580,252 - GFF1264 0.51 -0.9 580,599 + GFF1265 0.16 -1.1 580,600 - GFF1265 0.16 +1.0 580,770 + GFF1265 0.34 -0.5 581,271 + GFF1265 0.88 -0.6 581,272 - GFF1265 0.88 -1.2 581,287 - GFF1265 0.90 -1.1 581,352 + -1.3 581,353 - +0.7 581,353 - -0.2 581,373 + -1.2 581,373 + +0.0 581,374 - -0.3 581,374 - -0.4 581,379 + -0.8 581,380 - -1.2 581,380 - +0.1 581,612 + -0.4 581,613 - +2.1 581,925 + GFF1266 0.26 +0.4 581,925 + GFF1266 0.26 -0.5
Or see this region's nucleotide sequence