Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF118 and GFF119 overlap by 4 nucleotides GFF119 and GFF120 are separated by 228 nucleotides
GFF118 - putative membrane protein, at 145,553 to 146,578
GFF118
GFF119 - FIG00348677: hypothetical protein, at 146,575 to 148,503
GFF119
GFF120 - Two-component transcriptional response regulator, LuxR family, at 148,732 to 149,274
GFF120
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -1
0
1
2 at 145.643 kb on + strand at 145.644 kb on - strand at 145.674 kb on + strand, within GFF118 at 145.674 kb on + strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.761 kb on - strand, within GFF118 at 145.926 kb on - strand, within GFF118 at 145.953 kb on - strand, within GFF118 at 145.995 kb on - strand, within GFF118 at 145.995 kb on - strand, within GFF118 at 145.995 kb on - strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.205 kb on - strand, within GFF118 at 146.205 kb on - strand, within GFF118 at 146.205 kb on - strand, within GFF118 at 146.210 kb on + strand, within GFF118 at 146.210 kb on + strand, within GFF118 at 146.210 kb on + strand, within GFF118 at 146.211 kb on - strand, within GFF118 at 146.211 kb on - strand, within GFF118 at 146.300 kb on + strand, within GFF118 at 146.400 kb on - strand, within GFF118 at 146.411 kb on + strand, within GFF118 at 146.411 kb on + strand, within GFF118 at 146.418 kb on - strand, within GFF118 at 146.681 kb on - strand at 146.966 kb on - strand, within GFF119 at 146.972 kb on - strand, within GFF119 at 146.972 kb on - strand, within GFF119 at 147.043 kb on + strand, within GFF119 at 147.043 kb on + strand, within GFF119 at 147.044 kb on - strand, within GFF119 at 147.044 kb on - strand, within GFF119 at 147.044 kb on - strand, within GFF119 at 147.049 kb on + strand, within GFF119 at 147.050 kb on - strand, within GFF119 at 147.050 kb on - strand, within GFF119 at 147.088 kb on + strand, within GFF119 at 147.317 kb on - strand, within GFF119 at 147.364 kb on - strand, within GFF119 at 147.601 kb on + strand, within GFF119 at 147.601 kb on + strand, within GFF119 at 147.728 kb on - strand, within GFF119 at 147.728 kb on - strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.746 kb on - strand, within GFF119 at 147.949 kb on + strand, within GFF119 at 148.360 kb on + strand at 148.583 kb on + strand at 148.584 kb on - strand at 148.584 kb on - strand at 148.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 145,643 + +0.5 145,644 - -1.2 145,674 + GFF118 0.12 -0.1 145,674 + GFF118 0.12 -0.2 145,675 - GFF118 0.12 +0.3 145,675 - GFF118 0.12 -0.2 145,675 - GFF118 0.12 +0.4 145,675 - GFF118 0.12 -0.2 145,675 - GFF118 0.12 +0.3 145,761 - GFF118 0.20 -0.4 145,926 - GFF118 0.36 -0.2 145,953 - GFF118 0.39 -0.4 145,995 - GFF118 0.43 -0.1 145,995 - GFF118 0.43 -0.8 145,995 - GFF118 0.43 -0.3 146,204 + GFF118 0.63 +0.2 146,204 + GFF118 0.63 +0.1 146,204 + GFF118 0.63 -1.4 146,204 + GFF118 0.63 -1.1 146,204 + GFF118 0.63 -1.0 146,205 - GFF118 0.64 +0.3 146,205 - GFF118 0.64 -0.6 146,205 - GFF118 0.64 +0.8 146,210 + GFF118 0.64 -0.4 146,210 + GFF118 0.64 -0.7 146,210 + GFF118 0.64 +0.8 146,211 - GFF118 0.64 -0.3 146,211 - GFF118 0.64 -0.7 146,300 + GFF118 0.73 -1.0 146,400 - GFF118 0.83 -0.4 146,411 + GFF118 0.84 +0.2 146,411 + GFF118 0.84 -1.1 146,418 - GFF118 0.84 +0.2 146,681 - -0.2 146,966 - GFF119 0.20 -0.4 146,972 - GFF119 0.21 +0.3 146,972 - GFF119 0.21 -0.8 147,043 + GFF119 0.24 +0.7 147,043 + GFF119 0.24 -0.3 147,044 - GFF119 0.24 +1.3 147,044 - GFF119 0.24 -0.7 147,044 - GFF119 0.24 -0.1 147,049 + GFF119 0.25 -0.0 147,050 - GFF119 0.25 -1.2 147,050 - GFF119 0.25 -0.4 147,088 + GFF119 0.27 -0.8 147,317 - GFF119 0.38 +0.5 147,364 - GFF119 0.41 +1.8 147,601 + GFF119 0.53 -0.2 147,601 + GFF119 0.53 +0.0 147,728 - GFF119 0.60 +0.4 147,728 - GFF119 0.60 -0.3 147,745 + GFF119 0.61 +1.9 147,745 + GFF119 0.61 +0.4 147,745 + GFF119 0.61 +0.5 147,745 + GFF119 0.61 -0.3 147,745 + GFF119 0.61 -0.8 147,746 - GFF119 0.61 -0.3 147,949 + GFF119 0.71 +2.3 148,360 + -0.3 148,583 + +0.7 148,584 - -0.0 148,584 - -0.1 148,584 - -0.0
Or see this region's nucleotide sequence