Strain Fitness in Variovorax sp. SCN45 around GFF1178

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1177 and GFF1178 are separated by 23 nucleotidesGFF1178 and GFF1179 are separated by 6 nucleotides GFF1177 - Serine protease, at 493,480 to 494,967 GFF1177 GFF1178 - hypothetical protein, at 494,991 to 495,332 GFF1178 GFF1179 - no description, at 495,339 to 497,222 GFF1179 Position (kb) 494 495 496Strain fitness (log2 ratio) -2 -1 0 1 2at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.164 kb on + strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.165 kb on - strand, within GFF1177at 494.264 kb on + strand, within GFF1177at 494.265 kb on - strand, within GFF1177at 494.265 kb on - strand, within GFF1177at 494.265 kb on - strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.266 kb on + strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 494.267 kb on - strand, within GFF1177at 495.214 kb on + strand, within GFF1178at 495.216 kb on + strand, within GFF1178at 495.405 kb on + strandat 495.406 kb on - strandat 495.453 kb on + strandat 495.772 kb on + strand, within GFF1179at 495.772 kb on + strand, within GFF1179at 495.772 kb on + strand, within GFF1179at 495.772 kb on + strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 495.773 kb on - strand, within GFF1179at 496.048 kb on + strand, within GFF1179at 496.049 kb on - strand, within GFF1179at 496.049 kb on - strand, within GFF1179at 496.049 kb on - strand, within GFF1179at 496.069 kb on + strand, within GFF1179at 496.069 kb on + strand, within GFF1179at 496.077 kb on + strand, within GFF1179at 496.077 kb on + strand, within GFF1179at 496.135 kb on + strand, within GFF1179at 496.136 kb on - strand, within GFF1179at 496.136 kb on - strand, within GFF1179at 496.194 kb on + strand, within GFF1179at 496.194 kb on + strand, within GFF1179at 496.195 kb on - strand, within GFF1179at 496.195 kb on - strand, within GFF1179at 496.195 kb on - strand, within GFF1179at 496.258 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.267 kb on + strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.268 kb on - strand, within GFF1179at 496.268 kb on - strand, within GFF1179

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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494,164 + GFF1177 0.46 -0.6
494,164 + GFF1177 0.46 -0.6
494,164 + GFF1177 0.46 +0.3
494,164 + GFF1177 0.46 -1.1
494,164 + GFF1177 0.46 +0.8
494,164 + GFF1177 0.46 -1.1
494,164 + GFF1177 0.46 +0.4
494,164 + GFF1177 0.46 +0.1
494,164 + GFF1177 0.46 +0.0
494,164 + GFF1177 0.46 -0.5
494,164 + GFF1177 0.46 +0.4
494,164 + GFF1177 0.46 +1.0
494,164 + GFF1177 0.46 -0.4
494,164 + GFF1177 0.46 -0.7
494,165 - GFF1177 0.46 -0.9
494,165 - GFF1177 0.46 -0.2
494,165 - GFF1177 0.46 +2.0
494,165 - GFF1177 0.46 -0.1
494,165 - GFF1177 0.46 +0.7
494,165 - GFF1177 0.46 -0.3
494,264 + GFF1177 0.53 -0.6
494,265 - GFF1177 0.53 +0.4
494,265 - GFF1177 0.53 -0.7
494,265 - GFF1177 0.53 -0.0
494,266 + GFF1177 0.53 +0.8
494,266 + GFF1177 0.53 -0.4
494,266 + GFF1177 0.53 +0.9
494,266 + GFF1177 0.53 +0.4
494,266 + GFF1177 0.53 +0.1
494,267 - GFF1177 0.53 -0.6
494,267 - GFF1177 0.53 +0.1
494,267 - GFF1177 0.53 -0.9
494,267 - GFF1177 0.53 -0.4
494,267 - GFF1177 0.53 -0.6
495,214 + GFF1178 0.65 -1.1
495,216 + GFF1178 0.66 -0.7
495,405 + +0.2
495,406 - -0.1
495,453 + +0.3
495,772 + GFF1179 0.23 +0.4
495,772 + GFF1179 0.23 -0.0
495,772 + GFF1179 0.23 -0.6
495,772 + GFF1179 0.23 +1.0
495,773 - GFF1179 0.23 +1.2
495,773 - GFF1179 0.23 -0.7
495,773 - GFF1179 0.23 +0.4
495,773 - GFF1179 0.23 -0.0
496,048 + GFF1179 0.38 +0.3
496,049 - GFF1179 0.38 +1.4
496,049 - GFF1179 0.38 -0.4
496,049 - GFF1179 0.38 +0.1
496,069 + GFF1179 0.39 -0.3
496,069 + GFF1179 0.39 -0.1
496,077 + GFF1179 0.39 -0.4
496,077 + GFF1179 0.39 -0.5
496,135 + GFF1179 0.42 -0.1
496,136 - GFF1179 0.42 +0.8
496,136 - GFF1179 0.42 -0.8
496,194 + GFF1179 0.45 -0.5
496,194 + GFF1179 0.45 -0.6
496,195 - GFF1179 0.45 +0.9
496,195 - GFF1179 0.45 +0.6
496,195 - GFF1179 0.45 -0.4
496,258 + GFF1179 0.49 +0.8
496,267 + GFF1179 0.49 -0.1
496,267 + GFF1179 0.49 -2.3
496,267 + GFF1179 0.49 -1.0
496,267 + GFF1179 0.49 +0.4
496,267 + GFF1179 0.49 +0.9
496,267 + GFF1179 0.49 -1.6
496,268 - GFF1179 0.49 -0.5
496,268 - GFF1179 0.49 +2.0
496,268 - GFF1179 0.49 +0.2

Or see this region's nucleotide sequence