Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1142 and GFF1143 are separated by 3 nucleotides GFF1143 and GFF1144 are separated by 38 nucleotides GFF1144 and GFF1145 are separated by 48 nucleotides GFF1145 and GFF1146 are separated by 1 nucleotides
GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019
GFF1142
GFF1143 - no description, at 459,023 to 459,760
GFF1143
GFF1144 - hypothetical protein, at 459,799 to 461,700
GFF1144
GFF1145 - hypothetical protein, at 461,749 to 462,117
GFF1145
GFF1146 - Pyrophosphate-energized proton pump (EC 3.6.1.1), at 462,119 to 464,635
GFF1146
Position (kb) 459
460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 459.304 kb on + strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.777 kb on + strand at 459.777 kb on + strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.962 kb on - strand at 459.962 kb on - strand at 459.962 kb on - strand at 460.331 kb on + strand, within GFF1144 at 460.331 kb on + strand, within GFF1144 at 460.331 kb on + strand, within GFF1144 at 460.477 kb on - strand, within GFF1144 at 461.063 kb on + strand, within GFF1144 at 461.063 kb on + strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.564 kb on + strand at 461.564 kb on + strand at 461.564 kb on + strand at 461.565 kb on - strand at 461.565 kb on - strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.693 kb on + strand at 461.694 kb on - strand at 461.694 kb on - strand at 461.777 kb on + strand at 461.777 kb on + strand at 461.778 kb on - strand at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.128 kb on + strand at 462.128 kb on + strand at 462.129 kb on - strand at 462.129 kb on - strand at 462.129 kb on - strand at 462.129 kb on - strand at 462.408 kb on + strand, within GFF1146 at 462.408 kb on + strand, within GFF1146 at 462.408 kb on + strand, within GFF1146 at 462.409 kb on - strand, within GFF1146 at 462.669 kb on + strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 459,304 + GFF1143 0.38 -0.4 459,305 - GFF1143 0.38 -0.8 459,305 - GFF1143 0.38 -0.2 459,305 - GFF1143 0.38 -0.4 459,305 - GFF1143 0.38 -0.6 459,597 + GFF1143 0.78 -0.0 459,597 + GFF1143 0.78 +0.3 459,597 + GFF1143 0.78 -0.4 459,598 - GFF1143 0.78 -0.2 459,598 - GFF1143 0.78 +0.4 459,598 - GFF1143 0.78 +0.1 459,598 - GFF1143 0.78 +0.7 459,651 + GFF1143 0.85 +0.2 459,651 + GFF1143 0.85 -0.5 459,651 + GFF1143 0.85 -0.4 459,651 + GFF1143 0.85 +0.1 459,651 + GFF1143 0.85 -0.2 459,651 + GFF1143 0.85 -0.2 459,651 + GFF1143 0.85 -0.6 459,652 - GFF1143 0.85 -0.3 459,652 - GFF1143 0.85 +0.7 459,652 - GFF1143 0.85 +0.1 459,772 + +0.4 459,772 + +0.4 459,772 + -0.3 459,772 + -0.6 459,772 + -1.0 459,772 + -0.9 459,772 + +0.6 459,772 + +1.4 459,773 - -0.9 459,773 - -0.4 459,773 - +0.1 459,773 - -0.1 459,773 - -0.0 459,773 - -1.3 459,773 - -1.4 459,773 - -0.5 459,773 - -0.4 459,773 - -0.1 459,777 + -0.7 459,777 + +0.0 459,778 - -1.2 459,778 - -0.2 459,778 - -0.3 459,778 - +0.8 459,821 + -1.1 459,821 + -0.2 459,821 + +0.1 459,822 - -0.7 459,822 - -0.3 459,822 - +1.0 459,822 - -0.4 459,822 - -0.9 459,822 - -0.4 459,835 + -1.1 459,835 + -1.1 459,835 + -0.3 459,835 + +0.1 459,835 + +0.7 459,836 - -0.7 459,836 - -0.2 459,836 - -0.4 459,836 - -0.9 459,836 - -0.7 459,836 - +0.4 459,836 - -0.8 459,961 + +0.2 459,961 + -0.0 459,961 + -0.4 459,962 - -0.6 459,962 - -0.2 459,962 - +0.4 460,331 + GFF1144 0.28 +1.7 460,331 + GFF1144 0.28 +0.5 460,331 + GFF1144 0.28 +0.6 460,477 - GFF1144 0.36 +1.4 461,063 + GFF1144 0.66 -0.3 461,063 + GFF1144 0.66 -0.2 461,064 - GFF1144 0.67 -0.9 461,064 - GFF1144 0.67 -0.2 461,064 - GFF1144 0.67 +0.7 461,064 - GFF1144 0.67 +0.1 461,064 - GFF1144 0.67 -0.7 461,064 - GFF1144 0.67 +0.0 461,255 + GFF1144 0.77 +0.0 461,255 + GFF1144 0.77 -0.7 461,255 + GFF1144 0.77 -0.6 461,255 + GFF1144 0.77 +0.3 461,255 + GFF1144 0.77 -0.1 461,255 + GFF1144 0.77 -0.3 461,255 + GFF1144 0.77 +0.1 461,255 + GFF1144 0.77 +0.6 461,255 + GFF1144 0.77 +0.1 461,256 - GFF1144 0.77 +0.1 461,256 - GFF1144 0.77 +1.8 461,256 - GFF1144 0.77 +0.0 461,256 - GFF1144 0.77 -1.0 461,256 - GFF1144 0.77 +0.2 461,256 - GFF1144 0.77 -0.8 461,256 - GFF1144 0.77 -0.5 461,256 - GFF1144 0.77 +0.8 461,256 - GFF1144 0.77 -0.4 461,256 - GFF1144 0.77 -0.4 461,256 - GFF1144 0.77 +0.7 461,276 + GFF1144 0.78 +0.8 461,276 + GFF1144 0.78 +0.1 461,276 + GFF1144 0.78 -0.6 461,276 + GFF1144 0.78 +0.2 461,277 - GFF1144 0.78 -1.8 461,277 - GFF1144 0.78 -1.2 461,277 - GFF1144 0.78 +0.0 461,277 - GFF1144 0.78 -0.6 461,277 - GFF1144 0.78 +0.5 461,483 + GFF1144 0.89 -1.1 461,483 + GFF1144 0.89 -0.5 461,483 + GFF1144 0.89 +0.2 461,483 + GFF1144 0.89 -1.1 461,483 + GFF1144 0.89 +0.3 461,483 + GFF1144 0.89 -0.6 461,483 + GFF1144 0.89 -0.3 461,483 + GFF1144 0.89 +0.2 461,483 + GFF1144 0.89 -0.2 461,483 + GFF1144 0.89 +0.4 461,483 + GFF1144 0.89 +0.6 461,484 - GFF1144 0.89 -0.6 461,484 - GFF1144 0.89 +0.2 461,484 - GFF1144 0.89 -0.6 461,484 - GFF1144 0.89 -0.2 461,484 - GFF1144 0.89 -0.2 461,484 - GFF1144 0.89 -1.4 461,484 - GFF1144 0.89 -0.3 461,484 - GFF1144 0.89 -1.0 461,484 - GFF1144 0.89 -0.2 461,484 - GFF1144 0.89 -0.3 461,484 - GFF1144 0.89 +0.7 461,484 - GFF1144 0.89 -0.6 461,484 - GFF1144 0.89 +0.2 461,484 - GFF1144 0.89 -0.4 461,484 - GFF1144 0.89 -0.7 461,484 - GFF1144 0.89 -1.2 461,564 + -0.3 461,564 + -0.7 461,564 + -2.0 461,565 - -1.4 461,565 - -3.0 461,576 + -0.8 461,576 + -0.6 461,576 + +0.1 461,576 + +0.2 461,576 + +0.0 461,577 - -0.5 461,577 - -0.0 461,577 - -0.1 461,577 - +0.8 461,577 - -0.6 461,577 - +1.1 461,693 + +0.1 461,694 - -0.8 461,694 - -0.1 461,777 + +0.4 461,777 + -0.9 461,778 - -0.2 462,038 + GFF1145 0.78 -0.0 462,038 + GFF1145 0.78 -0.5 462,038 + GFF1145 0.78 -0.9 462,038 + GFF1145 0.78 -1.2 462,038 + GFF1145 0.78 -0.2 462,038 + GFF1145 0.78 +0.3 462,038 + GFF1145 0.78 +0.7 462,038 + GFF1145 0.78 +0.0 462,038 + GFF1145 0.78 +0.7 462,039 - GFF1145 0.79 -0.4 462,039 - GFF1145 0.79 +0.5 462,039 - GFF1145 0.79 -0.4 462,039 - GFF1145 0.79 -0.5 462,039 - GFF1145 0.79 -0.3 462,039 - GFF1145 0.79 +1.4 462,041 + GFF1145 0.79 +0.3 462,041 + GFF1145 0.79 -0.9 462,041 + GFF1145 0.79 +0.4 462,041 + GFF1145 0.79 -0.1 462,041 + GFF1145 0.79 -0.2 462,041 + GFF1145 0.79 -0.4 462,041 + GFF1145 0.79 -1.0 462,041 + GFF1145 0.79 -0.4 462,042 - GFF1145 0.79 -1.1 462,042 - GFF1145 0.79 -0.5 462,042 - GFF1145 0.79 -0.2 462,042 - GFF1145 0.79 -1.6 462,042 - GFF1145 0.79 -0.2 462,042 - GFF1145 0.79 +0.3 462,128 + +1.6 462,128 + -0.6 462,129 - +2.7 462,129 - +0.4 462,129 - -0.6 462,129 - +2.7 462,408 + GFF1146 0.11 -0.6 462,408 + GFF1146 0.11 -0.1 462,408 + GFF1146 0.11 +0.1 462,409 - GFF1146 0.12 -0.0 462,669 + GFF1146 0.22 -0.2 462,670 - GFF1146 0.22 -0.8 462,670 - GFF1146 0.22 -0.7 462,670 - GFF1146 0.22 +0.2 462,670 - GFF1146 0.22 -1.5 462,670 - GFF1146 0.22 -1.8
Or see this region's nucleotide sequence