Strain Fitness in Variovorax sp. SCN45 around GFF1117

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1116 and GFF1118 overlap by 4 nucleotidesGFF1118 and GFF1117 overlap by 2 nucleotidesGFF1117 and GFF1119 are separated by 2 nucleotidesGFF1119 and GFF1120 are separated by 65 nucleotides GFF1116 - Membrane-bound lytic murein transglycosylase D, at 432,998 to 434,590 GFF1116 GFF1118 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 434,587 to 435,366 GFF1118 GFF1117 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 435,365 to 436,135 GFF1117 GFF1119 - Ribonuclease HI (EC 3.1.26.4), at 436,138 to 436,620 GFF1119 GFF1120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 436,686 to 437,141 GFF1120 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3at 434.455 kb on - strandat 434.792 kb on + strand, within GFF1118at 434.792 kb on + strand, within GFF1118at 434.792 kb on + strand, within GFF1118at 434.793 kb on - strand, within GFF1118at 434.793 kb on - strand, within GFF1118at 434.793 kb on - strand, within GFF1118at 434.844 kb on + strand, within GFF1118at 434.845 kb on - strand, within GFF1118at 434.845 kb on - strand, within GFF1118at 434.855 kb on + strand, within GFF1118at 434.855 kb on + strand, within GFF1118at 434.855 kb on + strand, within GFF1118at 434.856 kb on - strand, within GFF1118at 434.856 kb on - strand, within GFF1118at 435.023 kb on + strand, within GFF1118at 435.023 kb on + strand, within GFF1118at 435.023 kb on + strand, within GFF1118at 435.023 kb on + strand, within GFF1118at 435.024 kb on - strand, within GFF1118at 435.024 kb on - strand, within GFF1118at 435.024 kb on - strand, within GFF1118at 435.043 kb on - strand, within GFF1118at 435.053 kb on - strand, within GFF1118at 435.053 kb on - strand, within GFF1118at 435.053 kb on - strand, within GFF1118at 435.116 kb on + strand, within GFF1118at 435.116 kb on + strand, within GFF1118at 435.117 kb on - strand, within GFF1118at 435.220 kb on + strand, within GFF1118at 435.220 kb on + strand, within GFF1118at 435.220 kb on + strand, within GFF1118at 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.329 kb on + strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.330 kb on - strandat 435.379 kb on + strandat 435.380 kb on - strandat 435.381 kb on + strandat 435.381 kb on + strandat 435.419 kb on + strandat 435.419 kb on + strandat 435.419 kb on + strandat 435.420 kb on - strandat 435.420 kb on - strandat 435.420 kb on - strandat 435.420 kb on - strandat 435.476 kb on + strand, within GFF1117at 435.476 kb on + strand, within GFF1117at 435.477 kb on - strand, within GFF1117at 435.639 kb on + strand, within GFF1117at 435.639 kb on + strand, within GFF1117at 435.640 kb on - strand, within GFF1117at 435.640 kb on - strand, within GFF1117at 435.640 kb on - strand, within GFF1117at 435.785 kb on + strand, within GFF1117at 435.785 kb on + strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.786 kb on - strand, within GFF1117at 435.812 kb on + strand, within GFF1117at 435.812 kb on + strand, within GFF1117at 435.813 kb on - strand, within GFF1117at 435.813 kb on - strand, within GFF1117at 435.813 kb on - strand, within GFF1117at 435.843 kb on - strand, within GFF1117at 435.908 kb on + strand, within GFF1117at 435.908 kb on + strand, within GFF1117at 435.908 kb on + strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 435.909 kb on - strand, within GFF1117at 436.001 kb on + strand, within GFF1117at 436.002 kb on - strand, within GFF1117at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.191 kb on + strand, within GFF1119at 436.369 kb on + strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.384 kb on + strand, within GFF1119at 436.385 kb on - strand, within GFF1119at 436.385 kb on - strand, within GFF1119at 436.412 kb on + strand, within GFF1119at 436.719 kb on + strandat 436.719 kb on + strandat 436.719 kb on + strandat 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.969 kb on - strand, within GFF1120at 436.969 kb on - strand, within GFF1120

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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434,455 - -0.5
434,792 + GFF1118 0.26 +0.8
434,792 + GFF1118 0.26 -0.2
434,792 + GFF1118 0.26 -0.9
434,793 - GFF1118 0.26 -0.2
434,793 - GFF1118 0.26 +0.6
434,793 - GFF1118 0.26 -0.7
434,844 + GFF1118 0.33 +0.7
434,845 - GFF1118 0.33 -0.7
434,845 - GFF1118 0.33 -0.6
434,855 + GFF1118 0.34 -0.5
434,855 + GFF1118 0.34 +0.1
434,855 + GFF1118 0.34 -0.8
434,856 - GFF1118 0.34 +0.1
434,856 - GFF1118 0.34 +0.2
435,023 + GFF1118 0.56 +0.2
435,023 + GFF1118 0.56 -0.3
435,023 + GFF1118 0.56 +0.7
435,023 + GFF1118 0.56 -0.3
435,024 - GFF1118 0.56 -0.0
435,024 - GFF1118 0.56 -0.6
435,024 - GFF1118 0.56 -0.2
435,043 - GFF1118 0.58 +0.2
435,053 - GFF1118 0.60 -1.3
435,053 - GFF1118 0.60 -0.7
435,053 - GFF1118 0.60 -0.9
435,116 + GFF1118 0.68 -0.4
435,116 + GFF1118 0.68 -0.3
435,117 - GFF1118 0.68 -1.1
435,220 + GFF1118 0.81 +0.8
435,220 + GFF1118 0.81 +0.0
435,220 + GFF1118 0.81 -0.8
435,329 + -1.5
435,329 + +1.4
435,329 + -0.1
435,329 + -0.5
435,329 + -1.0
435,329 + +1.4
435,329 + -0.1
435,329 + -0.4
435,329 + +0.2
435,329 + +1.4
435,329 + +1.0
435,329 + -0.3
435,329 + -0.8
435,329 + -0.9
435,329 + -0.8
435,329 + -0.2
435,330 - -0.3
435,330 - +0.2
435,330 - +0.1
435,330 - +0.2
435,330 - -1.1
435,330 - +0.8
435,330 - -0.3
435,330 - -0.4
435,330 - +0.3
435,330 - -0.1
435,330 - +0.0
435,330 - -0.7
435,330 - -0.5
435,330 - +0.4
435,330 - -0.6
435,330 - +0.0
435,330 - +0.2
435,330 - -1.3
435,379 + +0.9
435,380 - -1.3
435,381 + -0.2
435,381 + -1.2
435,419 + -0.3
435,419 + -0.6
435,419 + -0.5
435,420 - +0.8
435,420 - -0.2
435,420 - -0.3
435,420 - +0.4
435,476 + GFF1117 0.14 -0.1
435,476 + GFF1117 0.14 +0.8
435,477 - GFF1117 0.15 -1.8
435,639 + GFF1117 0.36 +0.2
435,639 + GFF1117 0.36 -0.3
435,640 - GFF1117 0.36 +1.4
435,640 - GFF1117 0.36 -0.3
435,640 - GFF1117 0.36 +0.0
435,785 + GFF1117 0.54 -0.6
435,785 + GFF1117 0.54 +0.4
435,786 - GFF1117 0.55 +0.2
435,786 - GFF1117 0.55 +0.3
435,786 - GFF1117 0.55 -0.8
435,786 - GFF1117 0.55 -0.0
435,812 + GFF1117 0.58 +0.0
435,812 + GFF1117 0.58 +0.1
435,813 - GFF1117 0.58 +0.3
435,813 - GFF1117 0.58 -0.9
435,813 - GFF1117 0.58 -1.2
435,843 - GFF1117 0.62 +0.4
435,908 + GFF1117 0.70 -0.2
435,908 + GFF1117 0.70 +0.4
435,908 + GFF1117 0.70 -0.3
435,909 - GFF1117 0.71 -0.8
435,909 - GFF1117 0.71 -0.4
435,909 - GFF1117 0.71 +1.2
435,909 - GFF1117 0.71 +0.2
435,909 - GFF1117 0.71 -0.8
435,909 - GFF1117 0.71 +1.4
436,001 + GFF1117 0.82 -0.6
436,002 - GFF1117 0.83 +0.1
436,189 + GFF1119 0.11 +0.2
436,189 + GFF1119 0.11 -1.4
436,189 + GFF1119 0.11 -1.8
436,189 + GFF1119 0.11 -1.4
436,190 - GFF1119 0.11 -0.2
436,190 - GFF1119 0.11 -0.7
436,190 - GFF1119 0.11 -2.3
436,191 + GFF1119 0.11 -1.9
436,369 + GFF1119 0.48 -1.8
436,370 - GFF1119 0.48 -1.5
436,370 - GFF1119 0.48 -1.6
436,370 - GFF1119 0.48 -1.2
436,370 - GFF1119 0.48 -1.5
436,384 + GFF1119 0.51 -2.1
436,385 - GFF1119 0.51 -2.4
436,385 - GFF1119 0.51 -0.6
436,412 + GFF1119 0.57 -2.3
436,719 + -0.7
436,719 + +0.1
436,719 + +0.2
436,968 + GFF1120 0.62 -1.1
436,968 + GFF1120 0.62 +0.2
436,968 + GFF1120 0.62 +0.5
436,968 + GFF1120 0.62 +0.4
436,968 + GFF1120 0.62 -0.1
436,968 + GFF1120 0.62 +0.6
436,968 + GFF1120 0.62 -1.7
436,969 - GFF1120 0.62 +0.2
436,969 - GFF1120 0.62 +2.8

Or see this region's nucleotide sequence