Strain Fitness in Variovorax sp. SCN45 around GFF1075

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1074 and GFF1075 are separated by 342 nucleotidesGFF1075 and GFF1076 are separated by 234 nucleotidesGFF1076 and GFF1077 are separated by 366 nucleotides GFF1074 - no description, at 386,510 to 386,926 GFF1074 GFF1075 - no description, at 387,269 to 387,577 GFF1075 GFF1076 - no description, at 387,812 to 388,174 GFF1076 GFF1077 - no description, at 388,541 to 388,876 GFF1077 Position (kb) 387 388Strain fitness (log2 ratio) -2 -1 0 1 2at 386.338 kb on - strandat 386.338 kb on - strandat 386.353 kb on + strandat 386.354 kb on - strandat 386.354 kb on - strandat 386.354 kb on - strandat 386.354 kb on - strandat 386.354 kb on - strandat 386.375 kb on + strandat 386.375 kb on + strandat 386.539 kb on + strandat 386.547 kb on + strandat 386.597 kb on + strand, within GFF1074at 386.597 kb on + strand, within GFF1074at 386.597 kb on + strand, within GFF1074at 386.598 kb on - strand, within GFF1074at 386.599 kb on + strand, within GFF1074at 386.599 kb on + strand, within GFF1074at 386.599 kb on + strand, within GFF1074at 386.599 kb on + strand, within GFF1074at 386.599 kb on + strand, within GFF1074at 386.599 kb on + strand, within GFF1074at 386.600 kb on - strand, within GFF1074at 386.600 kb on - strand, within GFF1074at 386.600 kb on - strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.631 kb on + strand, within GFF1074at 386.632 kb on - strand, within GFF1074at 386.632 kb on - strand, within GFF1074at 386.632 kb on - strand, within GFF1074at 386.632 kb on - strand, within GFF1074at 386.632 kb on - strand, within GFF1074at 386.682 kb on - strand, within GFF1074at 386.695 kb on + strand, within GFF1074at 386.695 kb on + strand, within GFF1074at 386.695 kb on + strand, within GFF1074at 386.695 kb on + strand, within GFF1074at 386.695 kb on + strand, within GFF1074at 386.695 kb on + strand, within GFF1074at 386.696 kb on - strand, within GFF1074at 386.696 kb on - strand, within GFF1074at 386.696 kb on - strand, within GFF1074at 386.696 kb on - strand, within GFF1074at 386.696 kb on - strand, within GFF1074at 386.696 kb on - strand, within GFF1074at 386.696 kb on - strand, within GFF1074at 386.698 kb on - strand, within GFF1074at 386.808 kb on + strand, within GFF1074at 386.808 kb on + strand, within GFF1074at 386.808 kb on + strand, within GFF1074at 386.808 kb on + strand, within GFF1074at 386.808 kb on + strand, within GFF1074at 386.809 kb on - strand, within GFF1074at 386.809 kb on - strand, within GFF1074at 386.809 kb on - strand, within GFF1074at 386.836 kb on + strand, within GFF1074at 386.836 kb on + strand, within GFF1074at 386.908 kb on + strandat 386.918 kb on + strandat 386.918 kb on + strandat 386.918 kb on + strandat 386.918 kb on + strandat 386.919 kb on - strandat 386.960 kb on + strandat 386.961 kb on - strandat 386.961 kb on - strandat 387.074 kb on + strandat 387.074 kb on + strandat 387.131 kb on - strandat 387.169 kb on + strandat 387.213 kb on + strandat 387.213 kb on + strandat 387.213 kb on + strandat 387.213 kb on + strandat 387.214 kb on - strandat 387.214 kb on - strandat 387.214 kb on - strandat 387.214 kb on - strandat 387.214 kb on - strandat 387.214 kb on - strandat 387.216 kb on + strandat 387.216 kb on + strandat 387.217 kb on - strandat 387.217 kb on - strandat 387.217 kb on - strandat 387.443 kb on + strand, within GFF1075at 387.443 kb on + strand, within GFF1075at 387.443 kb on + strand, within GFF1075at 387.443 kb on + strand, within GFF1075at 387.444 kb on - strand, within GFF1075at 387.447 kb on + strand, within GFF1075at 387.448 kb on - strand, within GFF1075at 387.554 kb on - strandat 387.556 kb on + strandat 387.556 kb on + strandat 387.556 kb on + strandat 387.556 kb on + strandat 387.556 kb on + strandat 387.579 kb on - strandat 387.579 kb on - strandat 387.641 kb on + strandat 387.641 kb on + strandat 387.705 kb on - strandat 387.743 kb on - strandat 387.743 kb on - strandat 387.743 kb on - strandat 387.743 kb on - strandat 387.841 kb on - strandat 387.862 kb on - strand, within GFF1076at 387.862 kb on - strand, within GFF1076at 387.897 kb on + strand, within GFF1076at 387.897 kb on + strand, within GFF1076at 387.897 kb on + strand, within GFF1076at 387.897 kb on + strand, within GFF1076at 387.897 kb on + strand, within GFF1076at 387.898 kb on - strand, within GFF1076at 387.960 kb on + strand, within GFF1076at 387.972 kb on - strand, within GFF1076at 388.161 kb on + strandat 388.161 kb on + strandat 388.161 kb on + strandat 388.161 kb on + strandat 388.161 kb on + strandat 388.161 kb on + strandat 388.162 kb on - strandat 388.162 kb on - strandat 388.162 kb on - strandat 388.162 kb on - strandat 388.162 kb on - strandat 388.219 kb on + strandat 388.317 kb on + strandat 388.317 kb on + strandat 388.317 kb on + strandat 388.317 kb on + strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.318 kb on - strandat 388.321 kb on - strandat 388.333 kb on + strandat 388.334 kb on - strandat 388.334 kb on - strandat 388.429 kb on + strandat 388.430 kb on - strandat 388.431 kb on + strandat 388.431 kb on + strandat 388.431 kb on + strandat 388.432 kb on - strandat 388.461 kb on + strandat 388.461 kb on + strandat 388.461 kb on + strandat 388.462 kb on - strandat 388.478 kb on + strandat 388.478 kb on + strandat 388.479 kb on - strandat 388.479 kb on - strandat 388.507 kb on + strandat 388.508 kb on + strandat 388.508 kb on - strandat 388.508 kb on - strandat 388.508 kb on - strandat 388.508 kb on - strandat 388.508 kb on - strandat 388.508 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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386,338 - +0.1
386,338 - +1.0
386,353 + -0.4
386,354 - -0.6
386,354 - -0.5
386,354 - +2.4
386,354 - -0.8
386,354 - -0.7
386,375 + -0.0
386,375 + -1.8
386,539 + -1.0
386,547 + +0.4
386,597 + GFF1074 0.21 -0.6
386,597 + GFF1074 0.21 -0.2
386,597 + GFF1074 0.21 +0.4
386,598 - GFF1074 0.21 +0.2
386,599 + GFF1074 0.21 -1.1
386,599 + GFF1074 0.21 +0.1
386,599 + GFF1074 0.21 -0.9
386,599 + GFF1074 0.21 -0.3
386,599 + GFF1074 0.21 +0.1
386,599 + GFF1074 0.21 -0.1
386,600 - GFF1074 0.22 -1.9
386,600 - GFF1074 0.22 +0.2
386,600 - GFF1074 0.22 +1.0
386,631 + GFF1074 0.29 -0.4
386,631 + GFF1074 0.29 +0.7
386,631 + GFF1074 0.29 +0.2
386,631 + GFF1074 0.29 -1.2
386,631 + GFF1074 0.29 -0.1
386,631 + GFF1074 0.29 -0.9
386,631 + GFF1074 0.29 -0.1
386,631 + GFF1074 0.29 -0.3
386,632 - GFF1074 0.29 +1.2
386,632 - GFF1074 0.29 -0.2
386,632 - GFF1074 0.29 +1.1
386,632 - GFF1074 0.29 +0.6
386,632 - GFF1074 0.29 +0.4
386,682 - GFF1074 0.41 +0.7
386,695 + GFF1074 0.44 +0.3
386,695 + GFF1074 0.44 -0.3
386,695 + GFF1074 0.44 -0.6
386,695 + GFF1074 0.44 -0.7
386,695 + GFF1074 0.44 -0.9
386,695 + GFF1074 0.44 +1.0
386,696 - GFF1074 0.45 +0.5
386,696 - GFF1074 0.45 -0.7
386,696 - GFF1074 0.45 -0.0
386,696 - GFF1074 0.45 -0.5
386,696 - GFF1074 0.45 -0.6
386,696 - GFF1074 0.45 +0.6
386,696 - GFF1074 0.45 +0.2
386,698 - GFF1074 0.45 +0.3
386,808 + GFF1074 0.71 -0.9
386,808 + GFF1074 0.71 -1.1
386,808 + GFF1074 0.71 +0.0
386,808 + GFF1074 0.71 -0.4
386,808 + GFF1074 0.71 +0.9
386,809 - GFF1074 0.72 +0.4
386,809 - GFF1074 0.72 -0.4
386,809 - GFF1074 0.72 -0.5
386,836 + GFF1074 0.78 +1.0
386,836 + GFF1074 0.78 -0.8
386,908 + +0.4
386,918 + -0.7
386,918 + -0.2
386,918 + -0.2
386,918 + -0.2
386,919 - +0.7
386,960 + +0.3
386,961 - -0.4
386,961 - -0.1
387,074 + -0.3
387,074 + -0.3
387,131 - -1.4
387,169 + -1.0
387,213 + -0.1
387,213 + +1.8
387,213 + +0.7
387,213 + -0.0
387,214 - -0.0
387,214 - -0.7
387,214 - -0.6
387,214 - +0.0
387,214 - -0.4
387,214 - -0.4
387,216 + +1.4
387,216 + +0.4
387,217 - -0.4
387,217 - -0.2
387,217 - -0.9
387,443 + GFF1075 0.56 -0.6
387,443 + GFF1075 0.56 -1.2
387,443 + GFF1075 0.56 +0.5
387,443 + GFF1075 0.56 -0.0
387,444 - GFF1075 0.57 -1.4
387,447 + GFF1075 0.58 -0.3
387,448 - GFF1075 0.58 -1.7
387,554 - -0.5
387,556 + -1.6
387,556 + -0.1
387,556 + -1.0
387,556 + -0.7
387,556 + -0.0
387,579 - -0.7
387,579 - -0.8
387,641 + -0.1
387,641 + +0.6
387,705 - -0.4
387,743 - -0.4
387,743 - -0.0
387,743 - +0.2
387,743 - +0.1
387,841 - -0.6
387,862 - GFF1076 0.14 -2.0
387,862 - GFF1076 0.14 +0.4
387,897 + GFF1076 0.23 +0.9
387,897 + GFF1076 0.23 -0.7
387,897 + GFF1076 0.23 -0.9
387,897 + GFF1076 0.23 +0.3
387,897 + GFF1076 0.23 -0.1
387,898 - GFF1076 0.24 -1.1
387,960 + GFF1076 0.41 +1.6
387,972 - GFF1076 0.44 -0.1
388,161 + +0.1
388,161 + -0.6
388,161 + -0.5
388,161 + -0.0
388,161 + -0.3
388,161 + -0.5
388,162 - +0.4
388,162 - -0.3
388,162 - -1.9
388,162 - -1.4
388,162 - -0.1
388,219 + -1.5
388,317 + +0.3
388,317 + -0.6
388,317 + -0.3
388,317 + +0.4
388,318 - -1.1
388,318 - -1.0
388,318 - -1.0
388,318 - -0.3
388,318 - +0.0
388,318 - -0.1
388,318 - -0.6
388,318 - -0.7
388,318 - -0.4
388,321 - +0.4
388,333 + -1.0
388,334 - +0.7
388,334 - +0.4
388,429 + -0.7
388,430 - +0.5
388,431 + -0.9
388,431 + +0.4
388,431 + -0.6
388,432 - -0.4
388,461 + -0.5
388,461 + -0.3
388,461 + +0.0
388,462 - +1.7
388,478 + -0.6
388,478 + -0.4
388,479 - -0.3
388,479 - -1.6
388,507 + +0.1
388,508 + +0.9
388,508 - +0.0
388,508 - +0.0
388,508 - +0.1
388,508 - -0.4
388,508 - -0.6
388,508 - -0.1

Or see this region's nucleotide sequence