Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF861 and GFF862 are separated by 11 nucleotides GFF862 and GFF863 overlap by 4 nucleotides GFF863 and GFF864 overlap by 4 nucleotides
GFF861 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 168,094 to 169,617
GFF861
GFF862 - hypothetical protein, at 169,629 to 170,531
GFF862
GFF863 - KEGG: simple sugar transport system permease protein, at 170,528 to 171,562
GFF863
GFF864 - no description, at 171,559 to 173,121
GFF864
Position (kb) 170
171
172 Strain fitness (log2 ratio) -1
0
1
2 at 169.574 kb on - strand at 169.696 kb on - strand at 169.696 kb on - strand at 169.759 kb on + strand, within GFF862 at 169.760 kb on - strand, within GFF862 at 169.760 kb on - strand, within GFF862 at 170.210 kb on - strand, within GFF862 at 170.210 kb on - strand, within GFF862 at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.483 kb on - strand at 170.649 kb on + strand, within GFF863 at 170.650 kb on - strand, within GFF863 at 170.650 kb on - strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.303 kb on + strand, within GFF863 at 171.304 kb on - strand, within GFF863 at 171.304 kb on - strand, within GFF863 at 171.750 kb on - strand, within GFF864 at 171.750 kb on - strand, within GFF864
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 169,574 - -0.3 169,696 - +1.4 169,696 - -0.4 169,759 + GFF862 0.14 -0.2 169,760 - GFF862 0.15 +0.4 169,760 - GFF862 0.15 -1.6 170,210 - GFF862 0.64 -0.2 170,210 - GFF862 0.64 -1.1 170,482 + +0.8 170,482 + -0.3 170,482 + -0.0 170,482 + +0.3 170,482 + +0.9 170,483 - -0.2 170,649 + GFF863 0.12 +0.2 170,650 - GFF863 0.12 -0.2 170,650 - GFF863 0.12 +0.3 171,099 + GFF863 0.55 -1.2 171,099 + GFF863 0.55 +2.0 171,099 + GFF863 0.55 +0.4 171,099 + GFF863 0.55 -0.9 171,100 - GFF863 0.55 -0.7 171,100 - GFF863 0.55 -0.6 171,100 - GFF863 0.55 -1.1 171,100 - GFF863 0.55 -0.8 171,303 + GFF863 0.75 +0.0 171,304 - GFF863 0.75 -0.1 171,304 - GFF863 0.75 -0.9 171,750 - GFF864 0.12 -0.2 171,750 - GFF864 0.12 +0.1
Or see this region's nucleotide sequence